Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLBLI_RS01225 Genome accession   NZ_CP180210
Coordinates   292465..293028 (+) Length   187 a.a.
NCBI ID   WP_414829372.1    Uniprot ID   -
Organism   Alteromonas sp. H39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 287465..298028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBLI_RS01210 (ACLBLI_01210) - 288147..289202 (+) 1056 WP_414830878.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  ACLBLI_RS01215 (ACLBLI_01215) galK 289195..290334 (+) 1140 WP_414829370.1 galactokinase -
  ACLBLI_RS01220 (ACLBLI_01220) - 290661..292223 (+) 1563 WP_414829371.1 sodium/sugar symporter -
  ACLBLI_RS01225 (ACLBLI_01225) ssb 292465..293028 (+) 564 WP_414829372.1 single-stranded DNA-binding protein Machinery gene
  ACLBLI_RS01230 (ACLBLI_01230) - 293213..296251 (-) 3039 WP_414829373.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  ACLBLI_RS01235 (ACLBLI_01235) - 296557..297867 (+) 1311 WP_414829374.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20362.22 Da        Isoelectric Point: 5.2707

>NTDB_id=1094554 ACLBLI_RS01225 WP_414829372.1 292465..293028(+) (ssb) [Alteromonas sp. H39]
MASRGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEVAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGREGGGSNAGGGGGYQQRPQGNQGGYSNQGGGQQGGYGNQGGPQGNPQGG
RPQSGNQQPKQPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1094554 ACLBLI_RS01225 WP_414829372.1 292465..293028(+) (ssb) [Alteromonas sp. H39]
ATGGCAAGCAGAGGCGTGAATAAGGTCATTCTGGTGGGCAACCTGGGAAATGATCCTGAAGTCAGGTACATGCCCAATGG
CAATGCCGTCGCGAACCTTAGCCTGGCAACCAGTGAAAGCTGGAAAGACCAACAAGGGCAGGTTCAGGAACGTACAGAGT
GGCACCGCCTGACTATGTACCGTCGTCTGGCTGAAGTAGCGGGTGAGTACCTGAAAAAAGGCTCACAGATTTACGTTGAA
GGTAAACTGCAAACACGTAAGTGGCAGGATCAGCAAGGTCAGGACCGTTACACAACCGAAATCATTGTTGATCAGATGCA
AATGCTGGGCGGCCGTGAAGGCGGTGGTAGTAATGCCGGTGGTGGCGGTGGCTATCAGCAGCGCCCACAGGGTAACCAGG
GCGGCTACAGCAATCAGGGTGGTGGTCAGCAAGGAGGTTACGGCAACCAGGGTGGCCCACAAGGCAATCCACAGGGCGGT
CGACCGCAAAGCGGCAATCAGCAGCCTAAGCAACCGCCAATGGCTGAGCCTGACTTTGACTTTGACGATGATATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.566

100

0.599
  ssb Glaesserella parasuis strain SC1401

56.915

100

0.572
  ssb Neisseria gonorrhoeae MS11

49.727

97.861

0.487
  ssb Neisseria meningitidis MC58

46.809

100

0.471

Multiple sequence alignment