Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACMDW7_RS13720 | Genome accession | NZ_CP180191 |
| Coordinates | 3027213..3028301 (+) | Length | 362 a.a. |
| NCBI ID | WP_377303453.1 | Uniprot ID | - |
| Organism | Piscinibacterium candidicorallinum strain LMG 29480 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3026611..3037588 | 3027213..3028301 | within | 0 |
Gene organization within MGE regions
Location: 3026611..3037588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMDW7_RS13715 (ACMDW7_13715) | - | 3026611..3027039 (+) | 429 | WP_377303455.1 | hypothetical protein | - |
| ACMDW7_RS13720 (ACMDW7_13720) | pilU | 3027213..3028301 (+) | 1089 | WP_377303453.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACMDW7_RS13725 (ACMDW7_13725) | - | 3028375..3028815 (-) | 441 | WP_377303451.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ACMDW7_RS13730 (ACMDW7_13730) | - | 3028812..3029078 (-) | 267 | WP_377303449.1 | toxin HicA | - |
| ACMDW7_RS13735 (ACMDW7_13735) | - | 3029139..3030524 (-) | 1386 | WP_377303447.1 | L-serine ammonia-lyase | - |
| ACMDW7_RS13740 (ACMDW7_13740) | - | 3030567..3031571 (-) | 1005 | WP_377303445.1 | alpha/beta hydrolase | - |
| ACMDW7_RS13745 (ACMDW7_13745) | - | 3031791..3032435 (-) | 645 | WP_377303443.1 | exopolysaccharide biosynthesis protein | - |
| ACMDW7_RS13750 (ACMDW7_13750) | gcvP | 3032460..3035351 (-) | 2892 | WP_377303441.1 | aminomethyl-transferring glycine dehydrogenase | - |
| ACMDW7_RS13755 (ACMDW7_13755) | gcvH | 3035420..3035803 (-) | 384 | WP_377303439.1 | glycine cleavage system protein GcvH | - |
| ACMDW7_RS13760 (ACMDW7_13760) | gcvT | 3035905..3036996 (-) | 1092 | WP_377303437.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 362 a.a. Molecular weight: 39484.10 Da Isoelectric Point: 7.0919
>NTDB_id=1094376 ACMDW7_RS13720 WP_377303453.1 3027213..3028301(+) (pilU) [Piscinibacterium candidicorallinum strain LMG 29480]
MEGDSRRAEARNYVHILLDDLVQRGGSDLYLTAGAAPRAKVRGITQALSSEALAPGECAHLAFALLTPQQHAQFEQDKEL
NFAYALPGGQRFRVNLHYQRGEVSLVARAVNSSIPSISALGLPAQVEKLALLERGLVLVVGATGSGKSTTMAAMINHRAA
QRSGHILTVEDPIEYVFTHQASTVNQREVGTDTHSFSDALRNSMRQAPDTIVIGEIRDRDAMMQAITYAETGHLCLATLH
ANNANQAIKRVLNFFPETAHRQVLNDLSLNLKACISQRLLRGRQGQLVLACEVMMQSAYIADLIEKGAIDEIKAAMAKST
EVGMLTFDQCLHELWKTAKIDTETALSQADSRTDLGLKMKLG
MEGDSRRAEARNYVHILLDDLVQRGGSDLYLTAGAAPRAKVRGITQALSSEALAPGECAHLAFALLTPQQHAQFEQDKEL
NFAYALPGGQRFRVNLHYQRGEVSLVARAVNSSIPSISALGLPAQVEKLALLERGLVLVVGATGSGKSTTMAAMINHRAA
QRSGHILTVEDPIEYVFTHQASTVNQREVGTDTHSFSDALRNSMRQAPDTIVIGEIRDRDAMMQAITYAETGHLCLATLH
ANNANQAIKRVLNFFPETAHRQVLNDLSLNLKACISQRLLRGRQGQLVLACEVMMQSAYIADLIEKGAIDEIKAAMAKST
EVGMLTFDQCLHELWKTAKIDTETALSQADSRTDLGLKMKLG
Nucleotide
Download Length: 1089 bp
>NTDB_id=1094376 ACMDW7_RS13720 WP_377303453.1 3027213..3028301(+) (pilU) [Piscinibacterium candidicorallinum strain LMG 29480]
ATGGAAGGCGACAGCCGGCGGGCCGAAGCTCGCAACTACGTGCACATTCTGTTGGACGATCTGGTGCAACGCGGGGGATC
GGACCTCTACCTCACCGCCGGGGCAGCGCCGCGGGCCAAGGTGCGCGGCATCACGCAGGCACTCAGTTCCGAGGCGCTGG
CGCCCGGCGAGTGCGCGCATCTGGCCTTTGCCCTGCTCACGCCGCAGCAGCACGCGCAGTTTGAGCAGGACAAGGAGCTC
AACTTTGCCTACGCCCTGCCCGGCGGCCAGCGCTTTCGGGTGAATCTGCACTACCAGCGCGGCGAGGTCTCGCTGGTGGC
GCGCGCCGTGAACAGCAGCATCCCGAGCATCAGCGCGCTGGGCCTGCCTGCCCAGGTGGAAAAGCTGGCCCTGCTCGAAC
GCGGCCTGGTGCTGGTGGTGGGCGCCACGGGTTCCGGCAAGAGCACGACCATGGCGGCCATGATCAACCACCGCGCCGCC
CAGCGCAGCGGCCACATCCTCACCGTGGAAGACCCGATCGAGTACGTCTTTACCCACCAGGCCAGCACCGTGAACCAGCG
CGAGGTGGGCACCGACACGCACAGCTTCTCGGACGCGCTGCGCAACTCCATGCGCCAGGCGCCAGACACCATCGTCATCG
GCGAGATCCGCGACCGCGACGCGATGATGCAGGCCATCACCTACGCCGAGACCGGCCACCTTTGTCTGGCCACCCTGCAC
GCCAACAACGCCAACCAGGCCATCAAGCGCGTGCTCAACTTCTTCCCGGAAACCGCGCACCGCCAGGTGCTCAATGACCT
CTCGCTCAATCTGAAGGCCTGCATCTCGCAGCGCCTGCTGCGCGGCCGGCAGGGCCAGCTGGTGCTGGCCTGCGAGGTGA
TGATGCAGAGCGCCTACATCGCCGACCTGATCGAAAAAGGCGCCATCGACGAGATCAAGGCCGCCATGGCCAAGAGCACC
GAGGTCGGCATGCTCACCTTCGACCAGTGCCTGCACGAGCTCTGGAAGACCGCCAAGATCGACACCGAGACCGCGCTCAG
CCAGGCGGATTCACGGACGGATCTGGGGTTGAAGATGAAGTTGGGGTGA
ATGGAAGGCGACAGCCGGCGGGCCGAAGCTCGCAACTACGTGCACATTCTGTTGGACGATCTGGTGCAACGCGGGGGATC
GGACCTCTACCTCACCGCCGGGGCAGCGCCGCGGGCCAAGGTGCGCGGCATCACGCAGGCACTCAGTTCCGAGGCGCTGG
CGCCCGGCGAGTGCGCGCATCTGGCCTTTGCCCTGCTCACGCCGCAGCAGCACGCGCAGTTTGAGCAGGACAAGGAGCTC
AACTTTGCCTACGCCCTGCCCGGCGGCCAGCGCTTTCGGGTGAATCTGCACTACCAGCGCGGCGAGGTCTCGCTGGTGGC
GCGCGCCGTGAACAGCAGCATCCCGAGCATCAGCGCGCTGGGCCTGCCTGCCCAGGTGGAAAAGCTGGCCCTGCTCGAAC
GCGGCCTGGTGCTGGTGGTGGGCGCCACGGGTTCCGGCAAGAGCACGACCATGGCGGCCATGATCAACCACCGCGCCGCC
CAGCGCAGCGGCCACATCCTCACCGTGGAAGACCCGATCGAGTACGTCTTTACCCACCAGGCCAGCACCGTGAACCAGCG
CGAGGTGGGCACCGACACGCACAGCTTCTCGGACGCGCTGCGCAACTCCATGCGCCAGGCGCCAGACACCATCGTCATCG
GCGAGATCCGCGACCGCGACGCGATGATGCAGGCCATCACCTACGCCGAGACCGGCCACCTTTGTCTGGCCACCCTGCAC
GCCAACAACGCCAACCAGGCCATCAAGCGCGTGCTCAACTTCTTCCCGGAAACCGCGCACCGCCAGGTGCTCAATGACCT
CTCGCTCAATCTGAAGGCCTGCATCTCGCAGCGCCTGCTGCGCGGCCGGCAGGGCCAGCTGGTGCTGGCCTGCGAGGTGA
TGATGCAGAGCGCCTACATCGCCGACCTGATCGAAAAAGGCGCCATCGACGAGATCAAGGCCGCCATGGCCAAGAGCACC
GAGGTCGGCATGCTCACCTTCGACCAGTGCCTGCACGAGCTCTGGAAGACCGCCAAGATCGACACCGAGACCGCGCTCAG
CCAGGCGGATTCACGGACGGATCTGGGGTTGAAGATGAAGTTGGGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Vibrio cholerae strain A1552 |
51.149 |
96.133 |
0.492 |
| pilU | Pseudomonas stutzeri DSM 10701 |
49.28 |
95.856 |
0.472 |
| pilU | Acinetobacter baylyi ADP1 |
44.54 |
96.133 |
0.428 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.202 |
90.331 |
0.381 |