Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACMHYC_RS19015 | Genome accession | NZ_CP180027 |
| Coordinates | 4007445..4008635 (+) | Length | 396 a.a. |
| NCBI ID | WP_414659534.1 | Uniprot ID | - |
| Organism | Acinetobacter courvalinii isolate 2024CK-01798 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4002445..4013635
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMHYC_RS18990 (ACMHYC_18990) | - | 4003023..4003394 (-) | 372 | WP_199950452.1 | hypothetical protein | - |
| ACMHYC_RS18995 (ACMHYC_18995) | guaD | 4003711..4005027 (+) | 1317 | WP_199950455.1 | guanine deaminase | - |
| ACMHYC_RS19000 (ACMHYC_19000) | hpt | 4005252..4005779 (+) | 528 | WP_004776485.1 | hypoxanthine phosphoribosyltransferase | - |
| ACMHYC_RS19005 (ACMHYC_19005) | - | 4006012..4006263 (+) | 252 | WP_004660536.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| ACMHYC_RS19010 (ACMHYC_19010) | - | 4006319..4007017 (-) | 699 | WP_199950457.1 | DsbC family protein | - |
| ACMHYC_RS19015 (ACMHYC_19015) | pilU | 4007445..4008635 (+) | 1191 | WP_414659534.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACMHYC_RS19020 (ACMHYC_19020) | mnmE | 4008690..4010045 (-) | 1356 | WP_032871404.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| ACMHYC_RS19025 (ACMHYC_19025) | yidC | 4010160..4011917 (-) | 1758 | WP_005228173.1 | membrane protein insertase YidC | - |
| ACMHYC_RS19030 (ACMHYC_19030) | yidD | 4011923..4012243 (-) | 321 | WP_005228171.1 | membrane protein insertion efficiency factor YidD | - |
| ACMHYC_RS19035 (ACMHYC_19035) | rnpA | 4012253..4012648 (-) | 396 | WP_005228170.1 | ribonuclease P protein component | - |
| ACMHYC_RS19040 (ACMHYC_19040) | rpmH | 4012676..4012810 (-) | 135 | WP_000831329.1 | 50S ribosomal protein L34 | - |
Sequence
Protein
Download Length: 396 a.a. Molecular weight: 44849.55 Da Isoelectric Point: 6.6943
>NTDB_id=1094116 ACMHYC_RS19015 WP_414659534.1 4007445..4008635(+) (pilU) [Acinetobacter courvalinii isolate 2024CK-01798]
MYSAELLEEAKTFMFHMLTKVVEYGGSDLFITADFPPSIKLQGLMRSLGQQELTADKTKLFAYSLMNEKQRQEFEKEWEC
NFAINVPHVSRFRVNVFKQQLQIGMVIRTITSEIPTFQKLKLPESLKQVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWQHALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPEERRNQLLMDLSSNMKAIISQRLMRTQDGKGRRAAIEILLNTPLIADNILKGQFHALKEIMSKS
RELGMQTFDQALFDLYNEGAISYDEALRNADSVNELRLQIKLKATRQDGAPVAMMTALNVVPEQKAEQEQTAEEKE
MYSAELLEEAKTFMFHMLTKVVEYGGSDLFITADFPPSIKLQGLMRSLGQQELTADKTKLFAYSLMNEKQRQEFEKEWEC
NFAINVPHVSRFRVNVFKQQLQIGMVIRTITSEIPTFQKLKLPESLKQVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWQHALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPEERRNQLLMDLSSNMKAIISQRLMRTQDGKGRRAAIEILLNTPLIADNILKGQFHALKEIMSKS
RELGMQTFDQALFDLYNEGAISYDEALRNADSVNELRLQIKLKATRQDGAPVAMMTALNVVPEQKAEQEQTAEEKE
Nucleotide
Download Length: 1191 bp
>NTDB_id=1094116 ACMHYC_RS19015 WP_414659534.1 4007445..4008635(+) (pilU) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGTATAGCGCAGAATTACTCGAAGAAGCCAAAACATTTATGTTTCATATGCTGACCAAAGTAGTGGAATATGGTGGTTC
AGATTTATTTATTACTGCCGATTTTCCGCCCAGCATTAAATTACAGGGACTGATGCGTTCACTCGGGCAACAGGAACTGA
CGGCTGATAAAACCAAACTGTTTGCTTATAGCTTAATGAATGAAAAGCAACGCCAGGAGTTTGAAAAAGAATGGGAGTGT
AATTTTGCCATCAATGTTCCCCATGTTTCACGTTTTCGTGTCAATGTGTTTAAACAGCAGCTACAGATCGGCATGGTGAT
TCGTACCATTACCTCGGAAATTCCAACCTTTCAGAAGCTGAAGCTGCCTGAATCGCTTAAACAGGTGATTATGGAAAAAC
GTGGTCTAGTCTTGGTGGTAGGCGGTACCGGCTCAGGCAAATCAACCTCTTTGGCCGCCATGATTGATCATCGCAATGAA
AACTCAGCGGGACATATCATTACCGTTGAAGATCCGGTTGAGTACGTGCATAAACACAAAAAATCCATGATTACCCATCG
TGAAGTCGGTGTTGATTGTCACTCATGGCAGCATGCCCTGAAAAACACCTTACGTCAGGCACCCGATGTGATCCTGATTG
GGGAAATCCGTGATACGGAAACCATGGAACATGCGATTGCCTTTGCCGAAACAGGGCATCTTTGCCTAGGTACTTTACAC
GCCAACAATGCCAATCAGGCGCTGGACCGGATTATTAACTTCTTCCCGGAAGAACGTCGTAACCAGTTACTGATGGATCT
TTCATCCAATATGAAAGCTATTATTTCTCAACGATTGATGCGTACTCAGGATGGCAAAGGGCGTCGCGCAGCGATTGAAA
TTCTGCTGAATACACCGTTGATTGCAGATAATATTTTAAAAGGCCAGTTCCACGCACTGAAAGAGATTATGAGTAAATCA
CGTGAGCTGGGGATGCAAACCTTCGATCAGGCTTTATTCGATCTGTATAACGAAGGCGCGATTAGCTATGATGAGGCCTT
GCGTAATGCCGATTCAGTCAATGAATTGCGTTTGCAGATCAAACTCAAAGCCACACGTCAGGACGGCGCACCGGTTGCCA
TGATGACGGCATTAAATGTGGTACCAGAACAAAAAGCAGAGCAAGAACAGACCGCTGAAGAGAAGGAATAA
ATGTATAGCGCAGAATTACTCGAAGAAGCCAAAACATTTATGTTTCATATGCTGACCAAAGTAGTGGAATATGGTGGTTC
AGATTTATTTATTACTGCCGATTTTCCGCCCAGCATTAAATTACAGGGACTGATGCGTTCACTCGGGCAACAGGAACTGA
CGGCTGATAAAACCAAACTGTTTGCTTATAGCTTAATGAATGAAAAGCAACGCCAGGAGTTTGAAAAAGAATGGGAGTGT
AATTTTGCCATCAATGTTCCCCATGTTTCACGTTTTCGTGTCAATGTGTTTAAACAGCAGCTACAGATCGGCATGGTGAT
TCGTACCATTACCTCGGAAATTCCAACCTTTCAGAAGCTGAAGCTGCCTGAATCGCTTAAACAGGTGATTATGGAAAAAC
GTGGTCTAGTCTTGGTGGTAGGCGGTACCGGCTCAGGCAAATCAACCTCTTTGGCCGCCATGATTGATCATCGCAATGAA
AACTCAGCGGGACATATCATTACCGTTGAAGATCCGGTTGAGTACGTGCATAAACACAAAAAATCCATGATTACCCATCG
TGAAGTCGGTGTTGATTGTCACTCATGGCAGCATGCCCTGAAAAACACCTTACGTCAGGCACCCGATGTGATCCTGATTG
GGGAAATCCGTGATACGGAAACCATGGAACATGCGATTGCCTTTGCCGAAACAGGGCATCTTTGCCTAGGTACTTTACAC
GCCAACAATGCCAATCAGGCGCTGGACCGGATTATTAACTTCTTCCCGGAAGAACGTCGTAACCAGTTACTGATGGATCT
TTCATCCAATATGAAAGCTATTATTTCTCAACGATTGATGCGTACTCAGGATGGCAAAGGGCGTCGCGCAGCGATTGAAA
TTCTGCTGAATACACCGTTGATTGCAGATAATATTTTAAAAGGCCAGTTCCACGCACTGAAAGAGATTATGAGTAAATCA
CGTGAGCTGGGGATGCAAACCTTCGATCAGGCTTTATTCGATCTGTATAACGAAGGCGCGATTAGCTATGATGAGGCCTT
GCGTAATGCCGATTCAGTCAATGAATTGCGTTTGCAGATCAAACTCAAAGCCACACGTCAGGACGGCGCACCGGTTGCCA
TGATGACGGCATTAAATGTGGTACCAGAACAAAAAGCAGAGCAAGAACAGACCGCTGAAGAGAAGGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
59.773 |
89.141 |
0.533 |
| pilU | Acinetobacter baylyi ADP1 |
56.196 |
87.626 |
0.492 |
| pilU | Vibrio cholerae strain A1552 |
53.179 |
87.374 |
0.465 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.814 |
84.343 |
0.361 |