Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACMHYC_RS17815 Genome accession   NZ_CP180027
Coordinates   3754668..3756104 (+) Length   478 a.a.
NCBI ID   WP_005226338.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3749668..3761104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS17795 (ACMHYC_17795) thrC 3749878..3751017 (+) 1140 WP_004656353.1 threonine synthase -
  ACMHYC_RS17800 (ACMHYC_17800) pbpG 3751144..3752208 (-) 1065 WP_199950289.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACMHYC_RS17805 (ACMHYC_17805) - 3752419..3753054 (+) 636 WP_004773961.1 response regulator -
  ACMHYC_RS17810 (ACMHYC_17810) pilS 3753081..3754649 (+) 1569 WP_199950288.1 sensor histidine kinase Regulator
  ACMHYC_RS17815 (ACMHYC_17815) pilR 3754668..3756104 (+) 1437 WP_005226338.1 sigma-54-dependent transcriptional regulator Regulator
  ACMHYC_RS17820 (ACMHYC_17820) - 3756145..3757317 (-) 1173 WP_199950287.1 S41 family peptidase -
  ACMHYC_RS17825 (ACMHYC_17825) gpmI 3757327..3758871 (-) 1545 WP_199950286.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACMHYC_RS17830 (ACMHYC_17830) lptG 3758994..3760064 (-) 1071 WP_005281054.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53569.62 Da        Isoelectric Point: 6.2466

>NTDB_id=1094110 ACMHYC_RS17815 WP_005226338.1 3754668..3756104(+) (pilR) [Acinetobacter courvalinii isolate 2024CK-01798]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHIAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLEMLVQQGRFRQDLFFRIHVMDLVLPPLRERGQDILL
LANHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSIANPAPAFANA
PAEEIETPQHSASPTMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=1094110 ACMHYC_RS17815 WP_005226338.1 3754668..3756104(+) (pilR) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGGCAACAAAACAACCACTCGTCTTGCTCGTAGACGATGAAGAGGATTTATGTCTTTTAATGCAGATGACGCTTGCGCG
GATGGGCATCAAAACACATATCGCTTATCGGGTCGAACAGGCAAAAAAATTCTTCACTGAATTCCAGTACGATGCATGCT
TAACAGATTTAAATCTTCCGGACGGGAATGGTTTAGACTTAGTGAAACATGTCACTCAAAACTATCCTAACACGCCGATT
GCAGTGCTTACTGCCTATGGCAACATGGACATCGCCATCGCAGCCCTCAAAGCAGGTGCCTTTGACTTTGTCAGCAAACC
GGTCAACCAGATGCATCTGGATCAGTTGATTCAGAAAGCATTGAACCGGCCACAGCCTGAACAGGAAGCTGCTGAAACCG
CTTTAGAAAACAAGCTTCTGATTGGACGTTCAGCTCCAATCCAGCAACTTCGCATTGCTTTAAAGAAGATCGCACGCTCT
CAAGCACCTGTATTTATCACAGGTGAATCAGGTACAGGCAAAGAAGTCGTAGCCAATCTGGTACATCGTTTGAGTAACCG
CAGCGAAGGGCCGTTTATTGCCATTAACTGTGGTGCCATTCCAACCGAATTGATGGAAAGCGAGTTATTTGGACACAAGA
AAGGCAGCTTCACTGGAGCTACACAAGATAAGCAAGGCTTAATTCTGTCTGCGCACGGCGGTAGTTTATTTCTGGATGAA
ATTGCTGAATTGCCGTTAAACATGCAGGTCAAATTACTACGTGCGGTGCAGGAAAAGAAAATTCGTCCGGTCGGTTCAGA
TCAGGAGATTGATGTCGATTTCCGTGTGATTAGTGCCAGCCATCAAGATCTGGAAATGCTGGTCCAGCAAGGCCGCTTCC
GTCAGGACCTGTTCTTCCGTATTCATGTCATGGATCTGGTGTTGCCGCCATTACGTGAGCGTGGTCAGGATATTCTGTTA
CTGGCCAATCACTTTATTCAAAAGATCAGTCAGGAATGGGAAGTGTCGGTGAAGACACTGTCTTCTCGTGCAGAGCAGTT
CTTGTTACAGCAATATTTTCCGGGTAATGTGCGCGAACTGCGTAATATCATTGAACGTGCCATTACACTCAGTGATGATG
AAACCATTGATCTGGCTCACTTGCAAACTGCGCCATTACGTAGCTCAATTGCAAATCCGGCGCCTGCATTTGCCAATGCA
CCGGCAGAAGAAATCGAAACGCCTCAACATTCTGCCAGTCCAACAATGAGTTCGAAAAAACTGCCACCAGAAGGTTTAGA
GCGCTATTTAGAGAATATCGAAAAAGAGATTCTGCTAAATGCCTTGAATCTGACCCACTGGAACCGGACTTTAGCGGCGA
AAAAGTTGGGAATGACCTTCCGCTCTTTACGCTATCGCTTGAAAAAATTCGGTTTGGATACCGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.891

100

0.839
  pilR Pseudomonas aeruginosa PAK

50.215

97.49

0.49

Multiple sequence alignment