Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACMHYC_RS17810 Genome accession   NZ_CP180027
Coordinates   3753081..3754649 (+) Length   522 a.a.
NCBI ID   WP_199950288.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3748081..3759649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS17790 (ACMHYC_17790) - 3748469..3749770 (+) 1302 WP_004773963.1 homoserine dehydrogenase -
  ACMHYC_RS17795 (ACMHYC_17795) thrC 3749878..3751017 (+) 1140 WP_004656353.1 threonine synthase -
  ACMHYC_RS17800 (ACMHYC_17800) pbpG 3751144..3752208 (-) 1065 WP_199950289.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACMHYC_RS17805 (ACMHYC_17805) - 3752419..3753054 (+) 636 WP_004773961.1 response regulator -
  ACMHYC_RS17810 (ACMHYC_17810) pilS 3753081..3754649 (+) 1569 WP_199950288.1 sensor histidine kinase Regulator
  ACMHYC_RS17815 (ACMHYC_17815) pilR 3754668..3756104 (+) 1437 WP_005226338.1 sigma-54-dependent transcriptional regulator Regulator
  ACMHYC_RS17820 (ACMHYC_17820) - 3756145..3757317 (-) 1173 WP_199950287.1 S41 family peptidase -
  ACMHYC_RS17825 (ACMHYC_17825) gpmI 3757327..3758871 (-) 1545 WP_199950286.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59232.23 Da        Isoelectric Point: 6.6169

>NTDB_id=1094109 ACMHYC_RS17810 WP_199950288.1 3753081..3754649(+) (pilS) [Acinetobacter courvalinii isolate 2024CK-01798]
MLGKIASSVSQTVYRLGVWYSGYRLIIAVSLLLIYLLTAEQLSSNYIYPSLYFYTLIAYITLNIIQLFVLHLVPVQVSRQ
LIVIFLIDVICLSLITFSAGGPNLQLSLLYVIIIFSSAILLNSQLSLIITLFAVIMVVYQRFLGDFFDSINLTHLGNSVF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIYLPVSLE
KTPLIKLQPDLFELIKFSDLKDGEEFSFESQQSPYTVHVRVKHLIVPEQALVLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAHQQEMLSRMISKQAKRIDSIVQDTLAMARNRPTEAQPIQLTSFFDSLLNEDLADAK
QMIRLKQPEQTTIVFDEKQLRQVLINLIRNALRHNATDAPFIEVDVHEKEGRICIDVIDFGMGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYIERQQGACFRMECSKFID

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1094109 ACMHYC_RS17810 WP_199950288.1 3753081..3754649(+) (pilS) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGTTAGGGAAAATTGCTTCATCGGTCTCTCAGACCGTCTATCGACTGGGCGTTTGGTATAGCGGCTATCGGCTGATTAT
TGCCGTTAGCCTGCTGCTGATTTATTTACTCACTGCCGAGCAACTCAGCAGTAATTATATTTATCCAAGCTTATATTTTT
ATACCCTGATTGCGTATATCACGCTGAATATCATTCAGCTTTTTGTCTTGCACCTGGTGCCTGTACAAGTCTCCAGACAG
CTGATTGTGATTTTTCTGATTGACGTGATCTGCTTGAGTTTAATCACCTTTTCAGCTGGCGGGCCTAATCTGCAACTGAG
CTTGCTCTATGTCATCATTATTTTCTCCTCGGCCATTTTATTAAATTCACAGTTATCACTGATCATCACCCTGTTTGCCG
TGATCATGGTGGTTTACCAGCGCTTTTTGGGTGATTTCTTTGATTCAATCAATCTAACTCATCTCGGCAATAGTGTTTTT
CTGGCCTTTTTATTTTTCGTGGTGCATGCCATTGGCCGCATCGCGGTCCAACGTTTTAAGATTTTAGAAACCCTCACGTT
TCATCAATCGATTGAAATCCACCAGCTGCAAAATATTAACCGTTATATTCTCGAGCAGATTGAAGACGGTTATCTGGTCC
TAGATGAAAGCAATCATATTGTGCTGACCAATCCAGCAGCCAATACCTTATTGGGAATTTATCTACCTGTTTCTCTTGAA
AAAACGCCATTAATCAAATTGCAGCCTGATCTATTTGAACTGATTAAATTTAGTGATTTAAAAGACGGTGAAGAGTTCAG
TTTTGAATCACAACAAAGCCCGTATACGGTTCATGTTCGTGTTAAACATTTGATTGTGCCCGAGCAGGCGCTGGTGTTAC
TGATCTTAAAAGATGCCCAGAAACTGACCCAGCAGGTGCAACAACTCAAGCTGGCGGCATTGGGGCAACTGTCTGCCAGT
ATTGCCCATGAAATTCGCAATCCATTGGCCGCCATTGTTCAGGCCAATGAGTTACTTAAAGACAGTGATGCACATCAGCA
AGAAATGCTGTCACGCATGATTAGCAAGCAAGCCAAACGTATTGATAGCATCGTCCAAGATACTTTGGCGATGGCTCGCA
ATCGGCCAACCGAAGCCCAACCCATCCAGCTCACCTCGTTCTTTGACAGTTTATTGAATGAAGATCTGGCGGATGCCAAA
CAGATGATCCGGTTAAAACAACCCGAACAGACGACGATCGTATTTGATGAAAAACAATTACGTCAGGTGCTGATTAATCT
GATCCGGAATGCCTTACGTCATAACGCCACCGATGCCCCCTTTATCGAAGTAGATGTTCATGAAAAAGAAGGTCGAATCT
GTATTGATGTCATCGATTTTGGGATGGGTGTCTCAAAACGGGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATACATTTTGTGAGGCGAATCATGCAAAGCTCACCTATATAGAGCG
ACAACAAGGAGCATGTTTCAGGATGGAATGCTCAAAATTCATAGATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)

PAS fold (PAS)

(203-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.234

98.084

0.64

Multiple sequence alignment