Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMHYC_RS01335 Genome accession   NZ_CP180027
Coordinates   284290..284862 (+) Length   190 a.a.
NCBI ID   WP_005227828.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 279290..289862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS01315 (ACMHYC_01315) - 280283..280636 (+) 354 WP_199949104.1 DUF1304 domain-containing protein -
  ACMHYC_RS01320 (ACMHYC_01320) tenA 280789..281463 (-) 675 WP_199949103.1 thiaminase II -
  ACMHYC_RS01325 (ACMHYC_01325) - 281636..282718 (+) 1083 WP_199949102.1 DUF475 domain-containing protein -
  ACMHYC_RS01330 (ACMHYC_01330) - 282877..284238 (+) 1362 WP_199949101.1 MFS transporter -
  ACMHYC_RS01335 (ACMHYC_01335) ssb 284290..284862 (+) 573 WP_005227828.1 single-stranded DNA-binding protein Machinery gene
  ACMHYC_RS01340 (ACMHYC_01340) - 285291..286724 (+) 1434 WP_199949100.1 amino acid permease -
  ACMHYC_RS01345 (ACMHYC_01345) - 286794..288293 (-) 1500 WP_005282511.1 PLP-dependent aminotransferase family protein -
  ACMHYC_RS01350 (ACMHYC_01350) gabT 288447..289739 (+) 1293 WP_262754718.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20988.72 Da        Isoelectric Point: 6.4820

>NTDB_id=1094073 ACMHYC_RS01335 WP_005227828.1 284290..284862(+) (ssb) [Acinetobacter courvalinii isolate 2024CK-01798]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWMDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQGEQSGGDFNQPRFNNNNNQGGGYQNTGYNNNNQNGGFNGGNQGNYAG
SPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=1094073 ACMHYC_RS01335 WP_005227828.1 284290..284862(+) (ssb) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTAGGACGAGATCCAGAAACAAAAACCTTCCCGAATGGCGGGTC
GCTTACTCAGTTCTCGATTGCAACGAGTGAGTCGTGGATGGACAAGAGTACAGGTGAACGTAAAGAGCAAACGGAATGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCTCAGCAATACCTGCGTAAAGGCTCAAAAGTCTATATCGAAGGT
TCATTACGTACCCGTCAATGGACCGACCAGAATGGTCAGGAACGTTATAGCACCGAAATCCGTGGCGACCAGATGCAAAT
GCTGGATACGCGTCAGCAAGGCGAGCAAAGCGGTGGCGATTTTAATCAACCACGCTTTAATAACAATAATAATCAAGGTG
GTGGCTACCAGAACACAGGTTATAACAATAACAACCAGAATGGTGGATTTAACGGCGGCAACCAAGGTAATTATGCGGGC
AGCCCTCAAGCAGGCAATGGTTTTAATACGCCAAAAGCAGCACCGCAACCTGCTGCAGCACCTGCGGATCTAGACGATGA
TTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.359

100

0.558
  ssb Vibrio cholerae strain A1552

45.078

100

0.458
  ssb Neisseria meningitidis MC58

39.791

100

0.4
  ssb Neisseria gonorrhoeae MS11

39.062

100

0.395

Multiple sequence alignment