Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMGGN_RS14565 Genome accession   NZ_CP179904
Coordinates   3123090..3125303 (-) Length   737 a.a.
NCBI ID   WP_414156054.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118090..3130303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGN_RS14530 (ACMGGN_14530) murB 3118431..3119450 (-) 1020 WP_174141824.1 UDP-N-acetylmuramate dehydrogenase -
  ACMGGN_RS14535 (ACMGGN_14535) - 3119447..3119911 (-) 465 WP_115275614.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGGN_RS14540 (ACMGGN_14540) kdsB 3119911..3120675 (-) 765 WP_046786568.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGGN_RS14545 (ACMGGN_14545) - 3120672..3120857 (-) 186 WP_003247142.1 Trm112 family protein -
  ACMGGN_RS14550 (ACMGGN_14550) lpxK 3120902..3121912 (-) 1011 WP_204920455.1 tetraacyldisaccharide 4'-kinase -
  ACMGGN_RS14555 (ACMGGN_14555) - 3121912..3122346 (-) 435 WP_012313421.1 ExbD/TolR family protein -
  ACMGGN_RS14560 (ACMGGN_14560) exbB 3122343..3122978 (-) 636 WP_039601022.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGGN_RS14565 (ACMGGN_14565) comA 3123090..3125303 (-) 2214 WP_414156054.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGGN_RS14570 (ACMGGN_14570) - 3125445..3126071 (+) 627 WP_119688512.1 DUF2062 domain-containing protein -
  ACMGGN_RS14575 (ACMGGN_14575) - 3125955..3126734 (-) 780 WP_012313417.1 ABC transporter permease -
  ACMGGN_RS14580 (ACMGGN_14580) - 3126731..3127663 (-) 933 WP_039601023.1 ABC transporter ATP-binding protein -
  ACMGGN_RS14585 (ACMGGN_14585) - 3127796..3128419 (-) 624 WP_046786572.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79592.44 Da        Isoelectric Point: 9.2733

>NTDB_id=1093685 ACMGGN_RS14565 WP_414156054.1 3123090..3125303(-) (comA) [Pseudomonas sp. BNK-30]
MRTGMFALALGLLCLGVLPELPSVGWLWLLFGGGLVCLGTRLWPLGCCVLGMCWACWSAQQALDDRLAPGLDGRTLWLEG
RVVGLPAHTLSGVRFELEQPRSRRAALPQRLQLHWFDGPPVRAGERWRLAATLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGHVLDAAQPGWRDALRQRLLSVAAHGREAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARWGLWPRALPWLPCACGLALGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALFPLLLALIGVLVAEPL
APLLPGFWLSFAAVATLVYCFSSRLGRWRPWQGWTRAQWVIAIGLLPVLIATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPLAGVGEGLLWLAGGLLDVLFRLLAWVADWRPAWIPPALPVWAWLMVCLGALLVLLPSGVPLRSLGGAMLLALW
VPREAVPQGQVEVWQLDVGQGLAVLLRTQNHSLLYDAGPARGDSDLGERVVLPTLHKLGVKRLDIMLISHAHADHAGGAP
AVYRGLPVLRVLGGEVLEDLALQPCASDEQWEWDGVRFSLWHWAQGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AAHATPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHVQVVERYRRHGMAIHDTAVEGALRLLLGNHG
EVEGVRAQKRFWRGSAP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1093685 ACMGGN_RS14565 WP_414156054.1 3123090..3125303(-) (comA) [Pseudomonas sp. BNK-30]
ATGCGCACAGGGATGTTTGCGCTGGCGCTCGGGCTGTTGTGCCTGGGCGTTCTCCCCGAGTTGCCATCGGTCGGGTGGCT
GTGGCTGCTGTTCGGCGGCGGCCTGGTTTGCCTGGGCACACGGCTGTGGCCGCTGGGCTGCTGCGTGCTGGGTATGTGCT
GGGCTTGCTGGTCGGCGCAGCAGGCACTGGATGATCGCCTGGCCCCAGGCCTGGATGGCCGAACGCTGTGGCTGGAGGGC
AGGGTGGTCGGCTTGCCGGCCCATACGCTGAGTGGTGTGCGCTTTGAGTTGGAGCAACCTCGCTCGCGCCGCGCTGCGTT
GCCCCAGCGCCTGCAATTGCACTGGTTTGATGGCCCGCCGGTGCGGGCTGGCGAGCGCTGGCGCCTGGCCGCTACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGTCCGGACCGGGAGGCGCAGTTGTTGGCCAGGCGTATCGGCGCCACTGGC
ACGGTCAAGGCGGGCCATGTGCTGGACGCCGCGCAGCCGGGTTGGCGTGACGCACTGCGCCAGCGCTTGTTGAGCGTCGC
CGCGCATGGCCGGGAAGCGGCCCTTGTCGCGTTGGTGCTCGGCGATGGCGCCGGCCTGGCCCGCGAGGACTGGCAAGCGC
TGCAGGCCACGGGCACGGTACACCTGTTGGTGATTTCGGGTCAGCACATCGGCCTGGTCGCCGGCCTGCTCTACGCCTTG
GTCGCGGGCCTGGCGCGCTGGGGCCTGTGGCCTCGGGCGCTACCCTGGTTGCCGTGTGCGTGTGGCCTGGCACTGGGTGC
GGCGCTGGCCTATGGCTGGCTGGCCGGTGCGGGGGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTTCTGCTCT
GGCGCCTGCGCTTTCGCCATCTTGGGGCGCTGTTCCCTTTGCTGCTGGCCCTCATCGGGGTGCTGGTCGCCGAGCCGCTG
GCGCCGCTGCTGCCAGGGTTCTGGCTGTCGTTTGCGGCGGTGGCGACCCTGGTCTACTGCTTCAGCTCACGTCTGGGCCG
CTGGCGGCCCTGGCAAGGATGGACCCGCGCCCAGTGGGTGATCGCCATCGGCTTGCTGCCGGTACTGATCGCCACCGGTT
TGCCAGTCAGCCTGAGTGCGCCACTGGCCAACTTGCTGGCAGTGCCCTGGGTCAGCCTTGCGGTATTGCCCTTGGCGCTG
CTTGGAACGTTGCTGCTGCCCTTGGCAGGGGTTGGTGAAGGCCTGTTGTGGTTGGCGGGTGGGCTGCTGGATGTCTTGTT
CCGGTTGCTGGCTTGGGTGGCGGACTGGCGCCCGGCGTGGATACCGCCTGCTTTGCCGGTCTGGGCCTGGCTGATGGTCT
GTTTGGGGGCGTTGCTGGTGCTGCTGCCGTCCGGTGTGCCCCTGCGCAGCCTGGGCGGGGCGATGCTGCTGGCGTTGTGG
GTGCCCAGGGAGGCTGTGCCGCAGGGGCAGGTGGAGGTCTGGCAGCTGGATGTCGGGCAGGGCTTGGCGGTACTGCTGCG
CACGCAAAACCATAGCCTGCTTTACGACGCCGGCCCGGCGCGGGGCGATAGTGATCTGGGTGAGCGGGTGGTGTTGCCGA
CCCTGCACAAGTTGGGCGTAAAGCGCCTGGACATCATGCTGATCAGCCATGCCCATGCCGACCATGCAGGTGGCGCGCCG
GCTGTCTACCGTGGGTTGCCGGTGTTGCGTGTGCTGGGCGGCGAAGTGTTGGAGGACCTTGCACTGCAGCCTTGTGCCAG
TGATGAGCAGTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCATTGGGCCCAAGGGCAGAGCAGCAACGACCGCTCTT
GCGTGTTGCTGGTCGAGGCGCAGGGGGAGCGGCTGCTGTTGGCAGGCGATATGGAGGCGGGCGCCGAGCGCGCGTGGTTG
GCGGCCCACGCGACGCCACGTATCGATTGGTTGCAATCACCGCACCATGGCAGCCGCAGTTCCTCGACAGAGGCATTCAT
CCGCGCTACGGCGCCGCGCGGCGTGCTGATTTCACGGGGGCGCAACAACGGTTTTGGGCATCCGCATGTGCAGGTGGTCG
AGCGCTATCGGCGGCATGGGATGGCCATTCACGATACGGCGGTGGAGGGGGCGTTGCGGTTGCTGCTGGGCAACCATGGC
GAAGTGGAAGGGGTGCGGGCGCAAAAGCGCTTTTGGCGGGGCAGCGCGCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.357

97.422

0.569
  comA Ralstonia pseudosolanacearum GMI1000

34.143

100

0.362

Multiple sequence alignment