Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMGGN_RS14560 Genome accession   NZ_CP179904
Coordinates   3122343..3122978 (-) Length   211 a.a.
NCBI ID   WP_039601022.1    Uniprot ID   A0A3R8VYX3
Organism   Pseudomonas sp. BNK-30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3117343..3127978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGN_RS14530 (ACMGGN_14530) murB 3118431..3119450 (-) 1020 WP_174141824.1 UDP-N-acetylmuramate dehydrogenase -
  ACMGGN_RS14535 (ACMGGN_14535) - 3119447..3119911 (-) 465 WP_115275614.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGGN_RS14540 (ACMGGN_14540) kdsB 3119911..3120675 (-) 765 WP_046786568.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGGN_RS14545 (ACMGGN_14545) - 3120672..3120857 (-) 186 WP_003247142.1 Trm112 family protein -
  ACMGGN_RS14550 (ACMGGN_14550) lpxK 3120902..3121912 (-) 1011 WP_204920455.1 tetraacyldisaccharide 4'-kinase -
  ACMGGN_RS14555 (ACMGGN_14555) - 3121912..3122346 (-) 435 WP_012313421.1 ExbD/TolR family protein -
  ACMGGN_RS14560 (ACMGGN_14560) exbB 3122343..3122978 (-) 636 WP_039601022.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGGN_RS14565 (ACMGGN_14565) comA 3123090..3125303 (-) 2214 WP_414156054.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGGN_RS14570 (ACMGGN_14570) - 3125445..3126071 (+) 627 WP_119688512.1 DUF2062 domain-containing protein -
  ACMGGN_RS14575 (ACMGGN_14575) - 3125955..3126734 (-) 780 WP_012313417.1 ABC transporter permease -
  ACMGGN_RS14580 (ACMGGN_14580) - 3126731..3127663 (-) 933 WP_039601023.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22891.17 Da        Isoelectric Point: 7.3616

>NTDB_id=1093684 ACMGGN_RS14560 WP_039601022.1 3122343..3122978(-) (exbB) [Pseudomonas sp. BNK-30]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEESASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1093684 ACMGGN_RS14560 WP_039601022.1 3122343..3122978(-) (exbB) [Pseudomonas sp. BNK-30]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAAATCCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAAGAGTGCATCGAGGAGTCTGCCTCGCGGGTCATTCATGAACTGGAGCGCTACAT
CAGCACCCTCGGTACCATCGCCGCGATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGGTCGCAGATGACCGCCAATGCGGCGGTGCTGGCCAGTGGTATCTCCAAGGCCCTTGTCACTACGGCA
GCCGGCCTGATGGTCGGCATCCCGGCAGTGTTCTTCCACCGCTTCCTGTTGCGCCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAGGTCATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8VYX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment