Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMGF5_RS16155 Genome accession   NZ_CP179898
Coordinates   3535562..3537775 (+) Length   737 a.a.
NCBI ID   WP_414156965.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3530562..3542775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGF5_RS16135 (ACMGF5_16135) - 3532446..3533069 (+) 624 WP_046786572.1 glutathione S-transferase -
  ACMGF5_RS16140 (ACMGF5_16140) - 3533202..3534134 (+) 933 WP_039601023.1 ABC transporter ATP-binding protein -
  ACMGF5_RS16145 (ACMGF5_16145) - 3534131..3534910 (+) 780 WP_012313417.1 ABC transporter permease -
  ACMGF5_RS16150 (ACMGF5_16150) - 3534794..3535420 (-) 627 WP_414156964.1 DUF2062 domain-containing protein -
  ACMGF5_RS16155 (ACMGF5_16155) comA 3535562..3537775 (+) 2214 WP_414156965.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGF5_RS16160 (ACMGF5_16160) exbB 3537887..3538522 (+) 636 WP_039601022.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGF5_RS16165 (ACMGF5_16165) - 3538519..3538953 (+) 435 WP_012313421.1 ExbD/TolR family protein -
  ACMGF5_RS16170 (ACMGF5_16170) lpxK 3538953..3539963 (+) 1011 WP_119688514.1 tetraacyldisaccharide 4'-kinase -
  ACMGF5_RS16175 (ACMGF5_16175) - 3540008..3540193 (+) 186 WP_003247142.1 Trm112 family protein -
  ACMGF5_RS16180 (ACMGF5_16180) kdsB 3540190..3540954 (+) 765 WP_046786568.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGF5_RS16185 (ACMGF5_16185) - 3540954..3541418 (+) 465 WP_115275614.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGF5_RS16190 (ACMGF5_16190) murB 3541415..3542434 (+) 1020 WP_174141824.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79629.50 Da        Isoelectric Point: 9.2736

>NTDB_id=1093554 ACMGF5_RS16155 WP_414156965.1 3535562..3537775(+) (comA) [Pseudomonas sp. BNK-15]
MRTGMFALALGLLCLGVLPELPSVGWLWLLFGGGLVCLGTRLWPLGCCVLGMCWACWSAQQALDDRLAPGLDGRTLWLEG
RVVGLPAHTLSGVRFELEQPRSRRAALPQRLQLHWFDGPPVRAGERWRLAATLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGHVLDAAQPGWRDALRQRLLSVAAHGREAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARWGLWPRALPWLPCACGLALGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALFPLLLALIGVLVAEPL
APLLPGFWLSFAAVATLVYCFSSRLGRWRPWQGWTRAQWVIAIGLLPVLIATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPLAGVGEGLLWLAGGLLDVLFRLLAWVAHWRPAWIPPALPVWAWLMVCLGALLVLLPSGVPLRSLGGAMLLALW
VPREAVPQGQVEVWQLDVGQGLAVLLRTQNHSLLYDAGPARGESDLGERVVLPTLHKLGVKRLDIMLISHAHADHAGGAP
AVYRGLPVLRVLGGEVLEDLALQPCASDEQWEWDGVRFSLWHWAQGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AAHATPRIDWLESPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHVQVVERYRRHGMAIHDTAVEGALRLLLGNHG
EVEGVRAQKRFWRGSAP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1093554 ACMGF5_RS16155 WP_414156965.1 3535562..3537775(+) (comA) [Pseudomonas sp. BNK-15]
ATGCGCACAGGGATGTTTGCGCTGGCGCTCGGGCTGTTGTGCCTGGGCGTTCTCCCCGAGTTGCCATCGGTCGGGTGGCT
GTGGCTGCTGTTCGGCGGCGGCCTGGTTTGCCTGGGCACACGGCTGTGGCCGCTGGGCTGCTGCGTGCTGGGTATGTGCT
GGGCTTGCTGGTCGGCGCAGCAGGCACTGGATGATCGCCTGGCCCCAGGCCTGGATGGCCGAACGCTGTGGCTGGAGGGC
AGGGTGGTCGGCTTGCCGGCCCATACGCTGAGTGGTGTGCGCTTTGAGTTGGAGCAACCTCGCTCGCGCCGCGCTGCGTT
GCCCCAGCGCCTGCAATTGCACTGGTTCGATGGCCCGCCGGTGCGGGCTGGCGAGCGCTGGCGCCTGGCCGCTACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGTCCGGACCGGGAGGCGCAGTTGTTGGCCAGGCGTATCGGCGCCACTGGT
ACGGTCAAGGCGGGCCATGTGCTGGACGCCGCGCAGCCGGGTTGGCGTGACGCACTGCGCCAGCGCTTGTTGAGCGTCGC
CGCGCATGGCCGGGAAGCGGCCCTTGTCGCATTGGTGCTCGGCGATGGCGCCGGCCTGGCCCGTGAGGACTGGCAAGCGC
TGCAGGCCACGGGCACGGTACACCTGTTGGTGATCTCGGGGCAGCACATCGGCCTGGTCGCCGGCCTGCTTTACGCCTTG
GTCGCCGGCCTGGCGCGCTGGGGCCTGTGGCCACGGGCGCTACCCTGGTTGCCGTGTGCGTGCGGCCTGGCACTGGGCGC
GGCGCTGGCCTATGGCTGGCTGGCCGGTGCGGGGGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTTCTGCTCT
GGCGCCTGCGCTTTCGCCATCTTGGGGCGCTGTTCCCTTTGCTGCTGGCCCTCATCGGGGTGCTGGTCGCCGAGCCGCTG
GCGCCGCTGCTGCCAGGGTTCTGGTTGTCGTTTGCGGCGGTGGCGACCCTGGTCTACTGCTTCAGCTCACGTCTGGGCCG
CTGGCGGCCCTGGCAAGGATGGACCCGCGCCCAGTGGGTGATCGCCATCGGCTTGCTGCCGGTACTGATCGCCACCGGTT
TGCCAGTCAGCCTGAGTGCGCCACTGGCCAACTTGCTGGCAGTGCCCTGGGTCAGCCTTGCGGTATTGCCCTTGGCGCTG
CTTGGAACGTTGCTGCTGCCCTTGGCAGGGGTTGGTGAAGGCCTGTTGTGGTTGGCGGGTGGGCTGCTGGATGTCTTGTT
CCGGTTGCTGGCTTGGGTGGCGCACTGGCGCCCGGCGTGGATACCGCCTGCTTTGCCGGTCTGGGCCTGGCTGATGGTCT
GTTTGGGGGCGTTGCTGGTGCTGCTGCCGTCCGGTGTGCCCCTGCGCAGCCTGGGCGGGGCGATGCTGCTGGCGTTGTGG
GTGCCCAGGGAGGCTGTGCCGCAGGGGCAGGTGGAGGTCTGGCAGCTGGATGTCGGGCAGGGCTTGGCGGTACTGCTGCG
CACGCAAAACCATAGCCTGCTTTACGACGCCGGCCCGGCGCGGGGCGAGAGCGATCTGGGTGAGCGGGTGGTGTTGCCGA
CCCTGCACAAGTTGGGCGTAAAGCGCCTGGACATCATGCTGATCAGCCATGCCCATGCCGACCATGCAGGTGGCGCGCCG
GCTGTCTACCGTGGGTTGCCGGTGTTGCGTGTGCTGGGCGGCGAAGTGTTGGAGGACCTTGCACTGCAGCCTTGTGCCAG
TGATGAGCAGTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCATTGGGCCCAAGGGCAGAGCAGCAACGACCGCTCTT
GCGTGTTGCTGGTCGAGGCGCAGGGGGAGCGGCTGCTGTTGGCAGGCGATATGGAGGCGGGCGCCGAGCGCGCGTGGTTG
GCGGCCCACGCGACGCCACGTATCGATTGGTTGGAATCACCGCACCATGGCAGCCGCAGTTCCTCGACAGAGGCATTCAT
CCGCGCTACGGCGCCGCGCGGCGTGCTGATTTCACGGGGGCGCAACAACGGTTTTGGGCATCCGCATGTGCAGGTGGTCG
AGCGCTATCGGCGGCATGGGATGGCCATTCACGATACGGCGGTGGAGGGGGCGTTGCGGTTGCTGCTGGGCAACCATGGC
GAAGTGGAAGGGGTGCGGGCGCAAAAGCGCTTTTGGCGGGGCAGCGCGCCGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.217

97.422

0.567
  comA Ralstonia pseudosolanacearum GMI1000

34.015

100

0.361

Multiple sequence alignment