Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMGF5_RS16160 Genome accession   NZ_CP179898
Coordinates   3537887..3538522 (+) Length   211 a.a.
NCBI ID   WP_039601022.1    Uniprot ID   A0A3R8VYX3
Organism   Pseudomonas sp. BNK-15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3532887..3543522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGF5_RS16140 (ACMGF5_16140) - 3533202..3534134 (+) 933 WP_039601023.1 ABC transporter ATP-binding protein -
  ACMGF5_RS16145 (ACMGF5_16145) - 3534131..3534910 (+) 780 WP_012313417.1 ABC transporter permease -
  ACMGF5_RS16150 (ACMGF5_16150) - 3534794..3535420 (-) 627 WP_414156964.1 DUF2062 domain-containing protein -
  ACMGF5_RS16155 (ACMGF5_16155) comA 3535562..3537775 (+) 2214 WP_414156965.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGF5_RS16160 (ACMGF5_16160) exbB 3537887..3538522 (+) 636 WP_039601022.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGF5_RS16165 (ACMGF5_16165) - 3538519..3538953 (+) 435 WP_012313421.1 ExbD/TolR family protein -
  ACMGF5_RS16170 (ACMGF5_16170) lpxK 3538953..3539963 (+) 1011 WP_119688514.1 tetraacyldisaccharide 4'-kinase -
  ACMGF5_RS16175 (ACMGF5_16175) - 3540008..3540193 (+) 186 WP_003247142.1 Trm112 family protein -
  ACMGF5_RS16180 (ACMGF5_16180) kdsB 3540190..3540954 (+) 765 WP_046786568.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGF5_RS16185 (ACMGF5_16185) - 3540954..3541418 (+) 465 WP_115275614.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGF5_RS16190 (ACMGF5_16190) murB 3541415..3542434 (+) 1020 WP_174141824.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22891.17 Da        Isoelectric Point: 7.3616

>NTDB_id=1093555 ACMGF5_RS16160 WP_039601022.1 3537887..3538522(+) (exbB) [Pseudomonas sp. BNK-15]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEESASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1093555 ACMGF5_RS16160 WP_039601022.1 3537887..3538522(+) (exbB) [Pseudomonas sp. BNK-15]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAAATCCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAAGAGTGCATCGAGGAGTCTGCCTCGCGGGTCATTCATGAACTGGAGCGCTACAT
CAGCACCCTCGGTACCATCGCCGCGATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGGTCGCAGATGACCGCCAATGCGGCGGTGCTGGCCAGTGGTATCTCCAAGGCCCTTGTCACTACGGCA
GCCGGCCTGATGGTCGGCATCCCGGCAGTGTTCTTCCACCGCTTCCTGTTGCGCCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAGGTCATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8VYX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment