Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMGF5_RS06325 | Genome accession | NZ_CP179898 |
| Coordinates | 1398783..1399334 (-) | Length | 183 a.a. |
| NCBI ID | WP_012316509.1 | Uniprot ID | A0A3R8V1N6 |
| Organism | Pseudomonas sp. BNK-15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1393783..1404334
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGF5_RS06295 (ACMGF5_06295) | - | 1393830..1395062 (-) | 1233 | WP_237860341.1 | ATP-grasp domain-containing protein | - |
| ACMGF5_RS06300 (ACMGF5_06300) | - | 1395059..1395934 (-) | 876 | WP_080952214.1 | iron-containing redox enzyme family protein | - |
| ACMGF5_RS06305 (ACMGF5_06305) | - | 1395944..1396390 (-) | 447 | WP_046788128.1 | DUF3291 domain-containing protein | - |
| ACMGF5_RS06310 (ACMGF5_06310) | - | 1396387..1396845 (-) | 459 | WP_046788129.1 | VOC family protein | - |
| ACMGF5_RS06315 (ACMGF5_06315) | - | 1396863..1397612 (-) | 750 | WP_046788130.1 | hypothetical protein | - |
| ACMGF5_RS06320 (ACMGF5_06320) | - | 1398516..1398689 (+) | 174 | WP_237860337.1 | heme-binding protein | - |
| ACMGF5_RS06325 (ACMGF5_06325) | ssb | 1398783..1399334 (-) | 552 | WP_012316509.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMGF5_RS06330 (ACMGF5_06330) | - | 1399344..1400738 (-) | 1395 | WP_046788131.1 | MFS transporter | - |
| ACMGF5_RS06335 (ACMGF5_06335) | uvrA | 1400868..1403702 (+) | 2835 | WP_177433171.1 | excinuclease ABC subunit UvrA | - |
| ACMGF5_RS06340 (ACMGF5_06340) | bfr | 1403773..1404237 (-) | 465 | WP_012316512.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20421.52 Da Isoelectric Point: 5.9312
>NTDB_id=1093543 ACMGF5_RS06325 WP_012316509.1 1398783..1399334(-) (ssb) [Pseudomonas sp. BNK-15]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAPRPQQAQQR
PAPQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAPRPQQAQQR
PAPQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=1093543 ACMGF5_RS06325 WP_012316509.1 1398783..1399334(-) (ssb) [Pseudomonas sp. BNK-15]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAAAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCTGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGTGGCCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAGGGTGGTGGTAACAACTACA
ACCAGGGTGGCCAGCAGCAACAGTACAACCAGGCCCCACCGCGTCAGCAGGCCCCGCGCCCGCAACAGGCCCAGCAGCGC
CCAGCGCCGCAACAGCCCGCGCCACAGCCGGCTGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAAAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCTGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGTGGCCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAGGGTGGTGGTAACAACTACA
ACCAGGGTGGCCAGCAGCAACAGTACAACCAGGCCCCACCGCGTCAGCAGGCCCCGCGCCCGCAACAGGCCCAGCAGCGC
CCAGCGCCGCAACAGCCCGCGCCACAGCCGGCTGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.595 |
100 |
0.552 |
| ssb | Glaesserella parasuis strain SC1401 |
50.267 |
100 |
0.514 |
| ssb | Neisseria gonorrhoeae MS11 |
49.189 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
98.361 |
0.47 |