Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMGGS_RS04235 Genome accession   NZ_CP179893
Coordinates   877860..878405 (-) Length   181 a.a.
NCBI ID   WP_414165164.1    Uniprot ID   -
Organism   Superficieibacter sp. BNK-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 872860..883405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGS_RS04210 (ACMGGS_04210) - 873535..874203 (-) 669 WP_414165159.1 glutathione S-transferase family protein -
  ACMGGS_RS04215 (ACMGGS_04215) soxR 874251..874709 (-) 459 WP_414165160.1 redox-sensitive transcriptional activator SoxR -
  ACMGGS_RS04220 (ACMGGS_04220) soxS 874795..875124 (+) 330 WP_414165161.1 superoxide response transcriptional regulator SoxS -
  ACMGGS_RS04225 (ACMGGS_04225) - 875109..876698 (-) 1590 WP_414165162.1 EAL domain-containing protein -
  ACMGGS_RS04230 (ACMGGS_04230) - 877512..877793 (+) 282 WP_414165163.1 YjcB family protein -
  ACMGGS_RS04235 (ACMGGS_04235) ssb 877860..878405 (-) 546 WP_414165164.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACMGGS_RS04240 (ACMGGS_04240) uvrA 878654..881476 (+) 2823 WP_414165165.1 excinuclease ABC subunit UvrA -
  ACMGGS_RS04245 (ACMGGS_04245) - 881619..882059 (+) 441 WP_414165166.1 hypothetical protein -
  ACMGGS_RS04250 (ACMGGS_04250) - 882062..882391 (+) 330 WP_414165167.1 hypothetical protein -
  ACMGGS_RS04255 (ACMGGS_04255) - 882393..882746 (-) 354 WP_414165168.1 MmcQ/YjbR family DNA-binding protein -
  ACMGGS_RS04260 (ACMGGS_04260) - 882749..883165 (-) 417 WP_414165169.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19602.59 Da        Isoelectric Point: 5.2456

>NTDB_id=1093432 ACMGGS_RS04235 WP_414165164.1 877860..878405(-) (ssb) [Superficieibacter sp. BNK-5]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSESWRDKQTGETKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRPQGGGAPAGGGQQGGWGQPQQPQQQSQGGNQFSGGAQSRPQPQ
QQAAPTQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1093432 ACMGGS_RS04235 WP_414165164.1 877860..878405(-) (ssb) [Superficieibacter sp. BNK-5]
ATGGCCAGTAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACTTGCCGAGTGG
TGGCGCAGTTGCCAACTTCACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGACGAAAGAGCAGACGG
AATGGCACCGCGTGGTGATGTTCGGCAAGCTGGCGGAAGTAGCCGGTGAGTATCTGCGCAAAGGTTCTCAGGTGTATATC
GAAGGACAGTTACGTACCCGTAAATGGACCGATCAAAGTGGTCAGGAACGCTATACCACGGAGATTAACGTCCCGCAGAT
TGGCGGCGTGATGCAGATGCTGGGCGGACGTCCGCAGGGCGGCGGCGCACCGGCAGGCGGCGGGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCTCAGCAGCAGTCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCCACAA
CAGCAGGCAGCCCCGACACAGTCCAACGAACCGCCGATGGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.505

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.527

100

0.591
  ssb Neisseria meningitidis MC58

45.604

100

0.459
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.459

Multiple sequence alignment