Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACK8DC_RS04505 | Genome accession | NZ_CP179883 |
| Coordinates | 949988..950089 (+) | Length | 33 a.a. |
| NCBI ID | WP_168713084.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain MRSN15091 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 885132..950825 | 949988..950089 | within | 0 |
Gene organization within MGE regions
Location: 885132..950825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK8DC_RS04190 (ACK8DC_04190) | - | 885533..886093 (-) | 561 | WP_001048354.1 | hypothetical protein | - |
| ACK8DC_RS04195 (ACK8DC_04195) | - | 886184..887044 (-) | 861 | WP_046693151.1 | pirin family protein | - |
| ACK8DC_RS04200 (ACK8DC_04200) | hemJ | 887215..887667 (-) | 453 | WP_000339889.1 | protoporphyrinogen oxidase HemJ | - |
| ACK8DC_RS04205 (ACK8DC_04205) | - | 887686..888915 (-) | 1230 | WP_004748109.1 | beta-ketoacyl-ACP synthase II | - |
| ACK8DC_RS04210 (ACK8DC_04210) | - | 889212..890537 (+) | 1326 | WP_004748107.1 | EcsC family protein | - |
| ACK8DC_RS04215 (ACK8DC_04215) | rpsL | 890738..891112 (+) | 375 | WP_000246374.1 | 30S ribosomal protein S12 | - |
| ACK8DC_RS04220 (ACK8DC_04220) | rpsG | 891272..891742 (+) | 471 | WP_001138055.1 | 30S ribosomal protein S7 | - |
| ACK8DC_RS04225 (ACK8DC_04225) | fusA | 891922..894060 (+) | 2139 | WP_004748104.1 | elongation factor G | - |
| ACK8DC_RS04230 (ACK8DC_04230) | tuf | 894155..895345 (+) | 1191 | WP_001029610.1 | elongation factor Tu | - |
| ACK8DC_RS04235 (ACK8DC_04235) | - | 895549..896430 (+) | 882 | WP_004748103.1 | metal-dependent hydrolase | - |
| ACK8DC_RS04240 (ACK8DC_04240) | - | 896667..897542 (+) | 876 | WP_000992291.1 | metal-dependent hydrolase | - |
| ACK8DC_RS04245 (ACK8DC_04245) | rimI | 897652..898107 (+) | 456 | WP_000621543.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ACK8DC_RS04250 (ACK8DC_04250) | - | 898152..898967 (-) | 816 | WP_000844343.1 | arginyltransferase | - |
| ACK8DC_RS04255 (ACK8DC_04255) | aat | 898986..899717 (-) | 732 | WP_000854785.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ACK8DC_RS04260 (ACK8DC_04260) | trxB | 899837..900784 (-) | 948 | WP_001276144.1 | thioredoxin-disulfide reductase | - |
| ACK8DC_RS04265 (ACK8DC_04265) | - | 901054..904086 (+) | 3033 | WP_004748102.1 | DNA translocase FtsK | - |
| ACK8DC_RS04270 (ACK8DC_04270) | rhtC | 904235..904855 (+) | 621 | WP_004748101.1 | threonine export protein RhtC | - |
| ACK8DC_RS04275 (ACK8DC_04275) | - | 904911..905450 (-) | 540 | WP_001067701.1 | hypothetical protein | - |
| ACK8DC_RS04280 (ACK8DC_04280) | - | 905598..905885 (-) | 288 | WP_001218560.1 | PA4642 family protein | - |
| ACK8DC_RS04285 (ACK8DC_04285) | minE | 905969..906241 (-) | 273 | WP_000896934.1 | cell division topological specificity factor MinE | - |
| ACK8DC_RS04290 (ACK8DC_04290) | minD | 906244..907056 (-) | 813 | WP_001074362.1 | septum site-determining protein MinD | - |
| ACK8DC_RS04295 (ACK8DC_04295) | minC | 907127..907849 (-) | 723 | WP_000763678.1 | septum site-determining protein MinC | - |
| ACK8DC_RS04300 (ACK8DC_04300) | - | 907971..909017 (-) | 1047 | WP_001181640.1 | hypothetical protein | - |
| ACK8DC_RS04305 (ACK8DC_04305) | - | 909033..909959 (-) | 927 | WP_000100973.1 | acyltransferase | - |
| ACK8DC_RS04310 (ACK8DC_04310) | - | 910204..910857 (+) | 654 | WP_001202415.1 | OmpA family protein | - |
| ACK8DC_RS04315 (ACK8DC_04315) | rep | 911051..913090 (+) | 2040 | WP_000093035.1 | DNA helicase Rep | - |
| ACK8DC_RS04320 (ACK8DC_04320) | dut | 913115..913567 (+) | 453 | WP_000868158.1 | dUTP diphosphatase | - |
| ACK8DC_RS04325 (ACK8DC_04325) | - | 913767..915185 (+) | 1419 | WP_001102848.1 | phosphomannomutase/phosphoglucomutase | - |
| ACK8DC_RS04330 (ACK8DC_04330) | argB | 915200..916108 (+) | 909 | WP_001135419.1 | acetylglutamate kinase | - |
| ACK8DC_RS04335 (ACK8DC_04335) | - | 916229..917011 (+) | 783 | WP_000890282.1 | GNAT family N-acetyltransferase | - |
| ACK8DC_RS04340 (ACK8DC_04340) | - | 917120..917968 (+) | 849 | WP_000336554.1 | class II glutamine amidotransferase | - |
| ACK8DC_RS04345 (ACK8DC_04345) | - | 918221..918676 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| ACK8DC_RS04350 (ACK8DC_04350) | - | 918829..919896 (+) | 1068 | WP_046693192.1 | membrane protein | - |
| ACK8DC_RS04355 (ACK8DC_04355) | - | 919896..920219 (+) | 324 | WP_000442590.1 | RnfH family protein | - |
| ACK8DC_RS04360 (ACK8DC_04360) | - | 920274..920672 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| ACK8DC_RS04365 (ACK8DC_04365) | fur | 920784..921221 (+) | 438 | WP_001122847.1 | ferric iron uptake transcriptional regulator | - |
| ACK8DC_RS04370 (ACK8DC_04370) | pilU | 921291..922409 (-) | 1119 | WP_000347040.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACK8DC_RS04375 (ACK8DC_04375) | pilT | 922437..923474 (-) | 1038 | WP_000355489.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACK8DC_RS04380 (ACK8DC_04380) | - | 923601..924293 (+) | 693 | WP_004748094.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACK8DC_RS04385 (ACK8DC_04385) | - | 924495..928091 (-) | 3597 | WP_004748092.1 | SbcC/MukB-like Walker B domain-containing protein | - |
| ACK8DC_RS04390 (ACK8DC_04390) | - | 928101..929369 (-) | 1269 | WP_004748090.1 | exonuclease SbcCD subunit D | - |
| ACK8DC_RS04395 (ACK8DC_04395) | - | 929534..930007 (+) | 474 | WP_000974355.1 | OsmC family protein | - |
| ACK8DC_RS04400 (ACK8DC_04400) | - | 930075..930452 (-) | 378 | WP_001059437.1 | VOC family protein | - |
| ACK8DC_RS04405 (ACK8DC_04405) | - | 930832..931284 (+) | 453 | WP_000164151.1 | ABZJ_00895 family protein | - |
| ACK8DC_RS04410 (ACK8DC_04410) | - | 931372..932277 (+) | 906 | WP_046693190.1 | TIGR01777 family oxidoreductase | - |
| ACK8DC_RS04415 (ACK8DC_04415) | - | 932269..933384 (-) | 1116 | WP_004748085.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACK8DC_RS04420 (ACK8DC_04420) | hemB | 933410..934423 (-) | 1014 | WP_004748084.1 | porphobilinogen synthase | - |
| ACK8DC_RS04425 (ACK8DC_04425) | - | 934566..935063 (+) | 498 | WP_002156418.1 | thioesterase family protein | - |
| ACK8DC_RS04430 (ACK8DC_04430) | - | 935333..936484 (+) | 1152 | WP_004748081.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
| ACK8DC_RS04435 (ACK8DC_04435) | - | 936491..938014 (+) | 1524 | WP_004748079.1 | DHA2 family efflux MFS transporter permease subunit | - |
| ACK8DC_RS04440 (ACK8DC_04440) | ggt | 938318..940303 (+) | 1986 | WP_004748076.1 | gamma-glutamyltransferase | - |
| ACK8DC_RS04450 (ACK8DC_04450) | - | 941005..942234 (+) | 1230 | WP_031999186.1 | tyrosine-type recombinase/integrase | - |
| ACK8DC_RS04455 (ACK8DC_04455) | - | 942382..943149 (+) | 768 | WP_000578618.1 | hypothetical protein | - |
| ACK8DC_RS04460 (ACK8DC_04460) | - | 943359..943574 (+) | 216 | WP_000153154.1 | hypothetical protein | - |
| ACK8DC_RS04465 (ACK8DC_04465) | - | 943577..943786 (+) | 210 | WP_001016479.1 | helix-turn-helix domain-containing protein | - |
| ACK8DC_RS04470 (ACK8DC_04470) | - | 943783..944337 (+) | 555 | WP_001988245.1 | Bro-N domain-containing protein | - |
| ACK8DC_RS04475 (ACK8DC_04475) | - | 944330..944698 (+) | 369 | WP_001046481.1 | hypothetical protein | - |
| ACK8DC_RS04480 (ACK8DC_04480) | - | 944708..945013 (+) | 306 | WP_000787149.1 | hypothetical protein | - |
| ACK8DC_RS04485 (ACK8DC_04485) | - | 945135..945413 (+) | 279 | WP_001064707.1 | hypothetical protein | - |
| ACK8DC_RS04490 (ACK8DC_04490) | - | 945426..947891 (+) | 2466 | WP_001022397.1 | DUF927 domain-containing protein | - |
| ACK8DC_RS04495 (ACK8DC_04495) | - | 948225..948341 (+) | 117 | WP_001992235.1 | single-stranded DNA-binding protein | - |
| ACK8DC_RS04500 (ACK8DC_04500) | - | 948564..950006 (+) | 1443 | WP_000003535.1 | hypothetical protein | - |
| ACK8DC_RS04505 (ACK8DC_04505) | ssb | 949988..950089 (+) | 102 | WP_168713084.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 33 a.a. Molecular weight: 3621.22 Da Isoelectric Point: 9.7265
>NTDB_id=1093396 ACK8DC_RS04505 WP_168713084.1 949988..950089(+) (ssb) [Acinetobacter baumannii strain MRSN15091]
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD
Nucleotide
Download Length: 102 bp
>NTDB_id=1093396 ACK8DC_RS04505 WP_168713084.1 949988..950089(+) (ssb) [Acinetobacter baumannii strain MRSN15091]
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.963 |
81.818 |
0.515 |
| ssb | Vibrio cholerae strain A1552 |
55.172 |
87.879 |
0.485 |
| ssb | Neisseria gonorrhoeae MS11 |
53.571 |
84.848 |
0.455 |
| ssb | Neisseria meningitidis MC58 |
53.571 |
84.848 |
0.455 |