Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACK8DE_RS04890 | Genome accession | NZ_CP179872 |
| Coordinates | 997725..997826 (+) | Length | 33 a.a. |
| NCBI ID | WP_168713084.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain MRSN15116 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 932009..998562 | 997725..997826 | within | 0 |
Gene organization within MGE regions
Location: 932009..998562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK8DE_RS04570 (ACK8DE_04570) | - | 932410..932970 (-) | 561 | WP_001048354.1 | hypothetical protein | - |
| ACK8DE_RS04575 (ACK8DE_04575) | - | 933061..933921 (-) | 861 | WP_046693151.1 | pirin family protein | - |
| ACK8DE_RS04580 (ACK8DE_04580) | hemJ | 934092..934544 (-) | 453 | WP_000339889.1 | protoporphyrinogen oxidase HemJ | - |
| ACK8DE_RS04585 (ACK8DE_04585) | - | 934563..935792 (-) | 1230 | WP_004748109.1 | beta-ketoacyl-ACP synthase II | - |
| ACK8DE_RS04590 (ACK8DE_04590) | - | 936089..937414 (+) | 1326 | WP_004748107.1 | EcsC family protein | - |
| ACK8DE_RS04595 (ACK8DE_04595) | rpsL | 937615..937989 (+) | 375 | WP_000246374.1 | 30S ribosomal protein S12 | - |
| ACK8DE_RS04600 (ACK8DE_04600) | rpsG | 938149..938619 (+) | 471 | WP_001138055.1 | 30S ribosomal protein S7 | - |
| ACK8DE_RS04605 (ACK8DE_04605) | fusA | 938799..940937 (+) | 2139 | WP_004748104.1 | elongation factor G | - |
| ACK8DE_RS04610 (ACK8DE_04610) | tuf | 941032..942222 (+) | 1191 | WP_001029610.1 | elongation factor Tu | - |
| ACK8DE_RS04615 (ACK8DE_04615) | - | 942426..943307 (+) | 882 | WP_004748103.1 | metal-dependent hydrolase | - |
| ACK8DE_RS04620 (ACK8DE_04620) | - | 943544..944419 (+) | 876 | WP_000992291.1 | metal-dependent hydrolase | - |
| ACK8DE_RS04625 (ACK8DE_04625) | rimI | 944529..944984 (+) | 456 | WP_000621543.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ACK8DE_RS04630 (ACK8DE_04630) | - | 945029..945844 (-) | 816 | WP_000844343.1 | arginyltransferase | - |
| ACK8DE_RS04635 (ACK8DE_04635) | aat | 945863..946594 (-) | 732 | WP_000854785.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ACK8DE_RS04640 (ACK8DE_04640) | trxB | 946714..947661 (-) | 948 | WP_001276144.1 | thioredoxin-disulfide reductase | - |
| ACK8DE_RS04645 (ACK8DE_04645) | - | 947931..950963 (+) | 3033 | WP_004748102.1 | DNA translocase FtsK | - |
| ACK8DE_RS04650 (ACK8DE_04650) | rhtC | 951112..951732 (+) | 621 | WP_004748101.1 | threonine export protein RhtC | - |
| ACK8DE_RS04655 (ACK8DE_04655) | - | 951788..952327 (-) | 540 | WP_001067701.1 | hypothetical protein | - |
| ACK8DE_RS04660 (ACK8DE_04660) | - | 952475..952762 (-) | 288 | WP_001218560.1 | PA4642 family protein | - |
| ACK8DE_RS04665 (ACK8DE_04665) | minE | 952846..953118 (-) | 273 | WP_000896934.1 | cell division topological specificity factor MinE | - |
| ACK8DE_RS04670 (ACK8DE_04670) | minD | 953121..953933 (-) | 813 | WP_001074362.1 | septum site-determining protein MinD | - |
| ACK8DE_RS04675 (ACK8DE_04675) | minC | 954004..954726 (-) | 723 | WP_000763678.1 | septum site-determining protein MinC | - |
| ACK8DE_RS04680 (ACK8DE_04680) | - | 954848..955894 (-) | 1047 | WP_001181640.1 | hypothetical protein | - |
| ACK8DE_RS04685 (ACK8DE_04685) | - | 955910..956836 (-) | 927 | WP_000100973.1 | acyltransferase | - |
| ACK8DE_RS04690 (ACK8DE_04690) | - | 957081..957734 (+) | 654 | WP_001202415.1 | OmpA family protein | - |
| ACK8DE_RS04695 (ACK8DE_04695) | rep | 957928..959967 (+) | 2040 | WP_000093035.1 | DNA helicase Rep | - |
| ACK8DE_RS04700 (ACK8DE_04700) | dut | 959992..960444 (+) | 453 | WP_000868158.1 | dUTP diphosphatase | - |
| ACK8DE_RS04705 (ACK8DE_04705) | - | 960644..962062 (+) | 1419 | WP_001102848.1 | phosphomannomutase/phosphoglucomutase | - |
| ACK8DE_RS04710 (ACK8DE_04710) | argB | 962077..962985 (+) | 909 | WP_001135419.1 | acetylglutamate kinase | - |
| ACK8DE_RS04715 (ACK8DE_04715) | - | 963106..963888 (+) | 783 | WP_000890282.1 | GNAT family N-acetyltransferase | - |
| ACK8DE_RS04720 (ACK8DE_04720) | - | 963997..964845 (+) | 849 | WP_000336554.1 | class II glutamine amidotransferase | - |
| ACK8DE_RS04725 (ACK8DE_04725) | - | 965098..965553 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| ACK8DE_RS04730 (ACK8DE_04730) | - | 965706..966773 (+) | 1068 | WP_046693192.1 | membrane protein | - |
| ACK8DE_RS04735 (ACK8DE_04735) | - | 966773..967096 (+) | 324 | WP_000442590.1 | RnfH family protein | - |
| ACK8DE_RS04740 (ACK8DE_04740) | - | 967151..967549 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| ACK8DE_RS04745 (ACK8DE_04745) | fur | 967661..968098 (+) | 438 | WP_001122847.1 | ferric iron uptake transcriptional regulator | - |
| ACK8DE_RS04750 (ACK8DE_04750) | pilU | 968168..969286 (-) | 1119 | WP_000347040.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACK8DE_RS04755 (ACK8DE_04755) | pilT | 969314..970351 (-) | 1038 | WP_000355489.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACK8DE_RS04760 (ACK8DE_04760) | - | 970478..971170 (+) | 693 | WP_004748094.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACK8DE_RS04765 (ACK8DE_04765) | - | 971372..974968 (-) | 3597 | WP_004748092.1 | SbcC/MukB-like Walker B domain-containing protein | - |
| ACK8DE_RS04770 (ACK8DE_04770) | - | 974978..976246 (-) | 1269 | WP_004748090.1 | exonuclease SbcCD subunit D | - |
| ACK8DE_RS04775 (ACK8DE_04775) | - | 976411..976884 (+) | 474 | WP_000974355.1 | OsmC family protein | - |
| ACK8DE_RS04780 (ACK8DE_04780) | - | 976952..977329 (-) | 378 | WP_001059437.1 | VOC family protein | - |
| ACK8DE_RS04785 (ACK8DE_04785) | - | 977412..978158 (+) | 747 | WP_009519074.1 | IS5-like element ISAba31 family transposase | - |
| ACK8DE_RS04790 (ACK8DE_04790) | - | 978569..979021 (+) | 453 | WP_000164151.1 | ABZJ_00895 family protein | - |
| ACK8DE_RS04795 (ACK8DE_04795) | - | 979109..980014 (+) | 906 | WP_046693190.1 | TIGR01777 family oxidoreductase | - |
| ACK8DE_RS04800 (ACK8DE_04800) | - | 980006..981121 (-) | 1116 | WP_004748085.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACK8DE_RS04805 (ACK8DE_04805) | hemB | 981147..982160 (-) | 1014 | WP_004748084.1 | porphobilinogen synthase | - |
| ACK8DE_RS04810 (ACK8DE_04810) | - | 982303..982800 (+) | 498 | WP_002156418.1 | thioesterase family protein | - |
| ACK8DE_RS04815 (ACK8DE_04815) | - | 983070..984221 (+) | 1152 | WP_004748081.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
| ACK8DE_RS04820 (ACK8DE_04820) | - | 984228..985751 (+) | 1524 | WP_004748079.1 | DHA2 family efflux MFS transporter permease subunit | - |
| ACK8DE_RS04825 (ACK8DE_04825) | ggt | 986055..988040 (+) | 1986 | WP_004748076.1 | gamma-glutamyltransferase | - |
| ACK8DE_RS04835 (ACK8DE_04835) | - | 988742..989971 (+) | 1230 | WP_031999186.1 | tyrosine-type recombinase/integrase | - |
| ACK8DE_RS04840 (ACK8DE_04840) | - | 990119..990886 (+) | 768 | WP_000578618.1 | hypothetical protein | - |
| ACK8DE_RS04845 (ACK8DE_04845) | - | 991096..991311 (+) | 216 | WP_000153154.1 | hypothetical protein | - |
| ACK8DE_RS04850 (ACK8DE_04850) | - | 991314..991523 (+) | 210 | WP_001016479.1 | helix-turn-helix domain-containing protein | - |
| ACK8DE_RS04855 (ACK8DE_04855) | - | 991520..992074 (+) | 555 | WP_001988245.1 | Bro-N domain-containing protein | - |
| ACK8DE_RS04860 (ACK8DE_04860) | - | 992067..992435 (+) | 369 | WP_001046481.1 | hypothetical protein | - |
| ACK8DE_RS04865 (ACK8DE_04865) | - | 992445..992750 (+) | 306 | WP_000787149.1 | hypothetical protein | - |
| ACK8DE_RS04870 (ACK8DE_04870) | - | 992872..993150 (+) | 279 | WP_001064707.1 | hypothetical protein | - |
| ACK8DE_RS04875 (ACK8DE_04875) | - | 993163..995628 (+) | 2466 | WP_001022397.1 | DUF927 domain-containing protein | - |
| ACK8DE_RS04880 (ACK8DE_04880) | - | 995962..996078 (+) | 117 | WP_001992235.1 | single-stranded DNA-binding protein | - |
| ACK8DE_RS04885 (ACK8DE_04885) | - | 996301..997743 (+) | 1443 | WP_000003535.1 | hypothetical protein | - |
| ACK8DE_RS04890 (ACK8DE_04890) | ssb | 997725..997826 (+) | 102 | WP_168713084.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 33 a.a. Molecular weight: 3621.22 Da Isoelectric Point: 9.7265
>NTDB_id=1093253 ACK8DE_RS04890 WP_168713084.1 997725..997826(+) (ssb) [Acinetobacter baumannii strain MRSN15116]
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD
Nucleotide
Download Length: 102 bp
>NTDB_id=1093253 ACK8DE_RS04890 WP_168713084.1 997725..997826(+) (ssb) [Acinetobacter baumannii strain MRSN15116]
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.963 |
81.818 |
0.515 |
| ssb | Vibrio cholerae strain A1552 |
55.172 |
87.879 |
0.485 |
| ssb | Neisseria gonorrhoeae MS11 |
53.571 |
84.848 |
0.455 |
| ssb | Neisseria meningitidis MC58 |
53.571 |
84.848 |
0.455 |