Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACMGFA_RS07205 Genome accession   NZ_CP179725
Coordinates   1345475..1345834 (-) Length   119 a.a.
NCBI ID   WP_414042934.1    Uniprot ID   -
Organism   Macrococcus sp. JEK85     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340475..1350834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGFA_RS07175 (ACMGFA_07175) gcvPA 1341165..1342508 (-) 1344 WP_414050261.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACMGFA_RS07180 (ACMGFA_07180) gcvT 1342521..1343606 (-) 1086 WP_414051513.1 glycine cleavage system aminomethyltransferase GcvT -
  ACMGFA_RS07185 (ACMGFA_07185) - 1343744..1344250 (-) 507 WP_414042938.1 shikimate kinase -
  ACMGFA_RS07190 (ACMGFA_07190) - 1344431..1344814 (-) 384 WP_414050262.1 competence type IV pilus minor pilin ComGF -
  ACMGFA_RS07195 (ACMGFA_07195) - 1344825..1345070 (-) 246 WP_414042936.1 hypothetical protein -
  ACMGFA_RS07200 (ACMGFA_07200) - 1345057..1345527 (-) 471 WP_414042935.1 hypothetical protein -
  ACMGFA_RS07205 (ACMGFA_07205) comGC 1345475..1345834 (-) 360 WP_414042934.1 competence type IV pilus major pilin ComGC Machinery gene
  ACMGFA_RS07210 (ACMGFA_07210) comGB 1345846..1346883 (-) 1038 WP_414042933.1 competence type IV pilus assembly protein ComGB -
  ACMGFA_RS07215 (ACMGFA_07215) comGA 1346870..1347838 (-) 969 WP_414049835.1 competence type IV pilus ATPase ComGA Machinery gene
  ACMGFA_RS07220 (ACMGFA_07220) - 1348050..1348298 (+) 249 WP_414050263.1 DUF2626 domain-containing protein -
  ACMGFA_RS07225 (ACMGFA_07225) - 1348337..1348966 (-) 630 WP_414050264.1 MBL fold metallo-hydrolase -
  ACMGFA_RS07230 (ACMGFA_07230) - 1349059..1349298 (+) 240 WP_414042930.1 DUF2759 domain-containing protein -
  ACMGFA_RS07235 (ACMGFA_07235) - 1349341..1349652 (-) 312 WP_414050265.1 MTH1187 family thiamine-binding protein -
  ACMGFA_RS07240 (ACMGFA_07240) - 1349652..1350623 (-) 972 WP_414042928.1 ROK family glucokinase -
  ACMGFA_RS07245 (ACMGFA_07245) - 1350620..1350811 (-) 192 WP_414042927.1 YqgQ family protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13205.40 Da        Isoelectric Point: 9.6829

>NTDB_id=1092924 ACMGFA_RS07205 WP_414042934.1 1345475..1345834(-) (comGC) [Macrococcus sp. JEK85]
MFSTINNKLNSLVQSFKQQFKKRDGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQNTGCTAQVKMVQGQIEAYKLQNG
KSPTSINELVPEFLKENQVKCKNGNPINIDNGEAVAQKS

Nucleotide


Download         Length: 360 bp        

>NTDB_id=1092924 ACMGFA_RS07205 WP_414042934.1 1345475..1345834(-) (comGC) [Macrococcus sp. JEK85]
ATGTTTTCAACAATAAATAATAAATTAAATTCTTTGGTTCAATCTTTTAAGCAACAATTTAAAAAGAGGGATGGATTTAC
ATTAATAGAAATGTTACTCGTATTACTCGTTATTTCAGTATTAATTATCGTCATTATCCCAAACATCGCAAAACAATCTG
ATAATGTACAAAATACAGGGTGCACAGCACAAGTAAAAATGGTTCAAGGTCAAATAGAAGCTTACAAGTTACAAAATGGA
AAATCCCCAACATCTATTAATGAATTAGTGCCGGAATTTTTAAAAGAAAATCAGGTGAAGTGTAAAAATGGTAATCCAAT
TAATATTGACAATGGCGAAGCGGTCGCTCAAAAATCTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(21-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

61.224

82.353

0.504
  comGC Staphylococcus aureus N315

61.224

82.353

0.504

Multiple sequence alignment