Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLUPT_RS02995 Genome accession   NZ_CP179718
Coordinates   629496..630059 (+) Length   187 a.a.
NCBI ID   WP_237678238.1    Uniprot ID   -
Organism   Variovorax sp. SCN45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 624496..635059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUPT_RS02985 (ACLUPT_02985) uvrA 624861..627959 (-) 3099 WP_237678236.1 excinuclease ABC subunit UvrA -
  ACLUPT_RS02990 (ACLUPT_02990) - 628009..629388 (-) 1380 WP_237678237.1 chloride channel protein -
  ACLUPT_RS02995 (ACLUPT_02995) ssb 629496..630059 (+) 564 WP_237678238.1 single-stranded DNA-binding protein Machinery gene
  ACLUPT_RS03000 (ACLUPT_03000) - 630135..630554 (-) 420 WP_237678239.1 GFA family protein -
  ACLUPT_RS03005 (ACLUPT_03005) - 630577..631290 (-) 714 WP_237678240.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACLUPT_RS03010 (ACLUPT_03010) - 631460..632083 (+) 624 WP_237678241.1 FMN-binding negative transcriptional regulator -
  ACLUPT_RS03015 (ACLUPT_03015) - 632175..632909 (+) 735 WP_237678242.1 helix-turn-helix domain-containing protein -
  ACLUPT_RS03020 (ACLUPT_03020) - 632912..633382 (+) 471 WP_237678243.1 hypothetical protein -
  ACLUPT_RS03025 (ACLUPT_03025) - 633438..635012 (+) 1575 WP_237678244.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19595.49 Da        Isoelectric Point: 5.9554

>NTDB_id=1092805 ACLUPT_RS02995 WP_237678238.1 629496..630059(+) (ssb) [Variovorax sp. SCN45]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGNGGGGGGGGGYAPRAPAAAP
RAPAPAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1092805 ACLUPT_RS02995 WP_237678238.1 629496..630059(+) (ssb) [Variovorax sp. SCN45]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACCTTCCCGAGCGGCGATCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGTCAGGGCCAGGGCGGCCCGTCGGGCGGTCCCGAGGACGACGGCGGTTACTCGCAAGGCGGCGGTGGCG
GCGGCTACTCGCAGGGCGGCAATGGCGGTGGCGGCGGCGGCGGCGGCGGATACGCACCCCGCGCACCCGCGGCGGCACCG
CGTGCTCCGGCACCGGCTCCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGATATTCCCTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.041

100

0.545
  ssb Vibrio cholerae strain A1552

46.114

100

0.476
  ssb Neisseria gonorrhoeae MS11

45.405

98.93

0.449
  ssb Neisseria meningitidis MC58

44.324

98.93

0.438

Multiple sequence alignment