Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLSSQ_RS04865 Genome accession   NZ_CP179682
Coordinates   972806..973300 (+) Length   164 a.a.
NCBI ID   WP_014238487.1    Uniprot ID   -
Organism   Azospira sp. APE16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 967806..978300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSSQ_RS04845 (ACLSSQ_04845) - 968063..968413 (-) 351 WP_130459041.1 GlpM family protein -
  ACLSSQ_RS04850 (ACLSSQ_04850) - 968434..969747 (-) 1314 WP_014238490.1 dicarboxylate/amino acid:cation symporter -
  ACLSSQ_RS04855 (ACLSSQ_04855) aspA 969840..971258 (-) 1419 WP_416243936.1 aspartate ammonia-lyase -
  ACLSSQ_RS04860 (ACLSSQ_04860) - 971595..972773 (+) 1179 WP_416244285.1 MFS transporter -
  ACLSSQ_RS04865 (ACLSSQ_04865) ssb 972806..973300 (+) 495 WP_014238487.1 single-stranded DNA-binding protein Machinery gene
  ACLSSQ_RS04870 (ACLSSQ_04870) - 973406..974086 (-) 681 WP_416243937.1 hypothetical protein -
  ACLSSQ_RS04875 (ACLSSQ_04875) - 974285..975544 (-) 1260 WP_416243938.1 two-component system sensor histidine kinase NtrB -
  ACLSSQ_RS04880 (ACLSSQ_04880) - 975560..976078 (-) 519 WP_416243939.1 chemotaxis protein CheW -
  ACLSSQ_RS04885 (ACLSSQ_04885) - 976090..977724 (-) 1635 WP_416243940.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17755.70 Da        Isoelectric Point: 5.9731

>NTDB_id=1092555 ACLSSQ_RS04865 WP_014238487.1 972806..973300(+) (ssb) [Azospira sp. APE16]
MAAVNKVILLGNLGADPETRYMPNGDAVATVRLATTETWKDRNSGEKREATEWHRVVFFRKLAEIVGQYLKKGSSVYIEG
RIRTRKWQDKDGQERYTTEIEATEMQMLGGRGGQGGQGGGSGASYGGGDDFGGGDFSPRSSAPAASAPKKKAPSFDDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1092555 ACLSSQ_RS04865 WP_014238487.1 972806..973300(+) (ssb) [Azospira sp. APE16]
ATGGCTGCAGTCAATAAAGTGATTCTTTTGGGCAATCTGGGGGCCGATCCGGAAACCCGTTACATGCCCAACGGTGACGC
TGTGGCCACTGTCCGCCTGGCTACCACCGAAACCTGGAAAGACCGCAATTCCGGCGAGAAGCGTGAAGCCACCGAATGGC
ACCGGGTGGTGTTCTTCCGCAAGCTGGCCGAGATCGTCGGCCAGTACCTGAAGAAGGGCTCTTCCGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACAAGGACGGCCAGGAACGCTACACCACCGAAATCGAAGCCACCGAAATGCAGAT
GCTCGGCGGCCGTGGCGGCCAGGGCGGCCAAGGTGGCGGCAGCGGTGCCTCCTACGGCGGCGGCGACGACTTCGGTGGCG
GCGATTTCAGCCCCCGTTCCTCCGCCCCCGCTGCCTCTGCGCCGAAGAAGAAGGCCCCGTCTTTCGACGACATGGACGAC
GACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.549

100

0.561
  ssb Vibrio cholerae strain A1552

52.601

100

0.555
  ssb Neisseria meningitidis MC58

50.575

100

0.537
  ssb Neisseria gonorrhoeae MS11

49.143

100

0.524

Multiple sequence alignment