Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMDCR_RS16310 Genome accession   NZ_CP178864
Coordinates   3486555..3487049 (+) Length   164 a.a.
NCBI ID   WP_413993509.1    Uniprot ID   -
Organism   Labrys okinawensis strain DSM 18385     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3481555..3492049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDCR_RS16280 (ACMDCR_16280) - 3481725..3482225 (+) 501 WP_413993503.1 hypothetical protein -
  ACMDCR_RS16285 (ACMDCR_16285) - 3482349..3482555 (-) 207 WP_413993504.1 ribbon-helix-helix domain-containing protein -
  ACMDCR_RS16290 (ACMDCR_16290) - 3482806..3483315 (+) 510 WP_413993505.1 low affinity iron permease family protein -
  ACMDCR_RS16295 (ACMDCR_16295) - 3483403..3483531 (-) 129 WP_413993506.1 hypothetical protein -
  ACMDCR_RS16300 (ACMDCR_16300) - 3483995..3485521 (+) 1527 WP_413993507.1 hypothetical protein -
  ACMDCR_RS16305 (ACMDCR_16305) - 3485657..3486100 (-) 444 WP_413993508.1 hypothetical protein -
  ACMDCR_RS16310 (ACMDCR_16310) ssb 3486555..3487049 (+) 495 WP_413993509.1 single-stranded DNA-binding protein Machinery gene
  ACMDCR_RS16315 (ACMDCR_16315) - 3487170..3487802 (-) 633 WP_413993510.1 MarC family protein -
  ACMDCR_RS16320 (ACMDCR_16320) - 3487799..3487963 (-) 165 WP_413993511.1 hypothetical protein -
  ACMDCR_RS16325 (ACMDCR_16325) - 3487962..3489671 (+) 1710 WP_413993512.1 lysine--tRNA ligase -
  ACMDCR_RS16330 (ACMDCR_16330) secG 3489774..3490178 (+) 405 WP_413993513.1 preprotein translocase subunit SecG -
  ACMDCR_RS16335 (ACMDCR_16335) - 3490290..3491918 (+) 1629 WP_413993514.1 CTP synthase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17979.94 Da        Isoelectric Point: 7.0198

>NTDB_id=1092031 ACMDCR_RS16310 WP_413993509.1 3486555..3487049(+) (ssb) [Labrys okinawensis strain DSM 18385]
MSGSVNKVILVGNLGRDPEIRRLNSGEPVVNLRIATAETWRDKATGERKERTEWHNVVIFNEGLARIAEQYLKKGSKVYI
EGQLQTRKYNDASGAEKYSTEIVLQRYRGEMTLLDGRGGGEGGSGSSGGYQGNDFGSSSPMERRPAPASASKYTSADMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1092031 ACMDCR_RS16310 WP_413993509.1 3486555..3487049(+) (ssb) [Labrys okinawensis strain DSM 18385]
ATGTCAGGCTCGGTGAACAAGGTTATTCTGGTTGGCAATCTCGGGCGCGACCCGGAAATCCGGCGGCTCAATTCCGGTGA
GCCGGTGGTCAATCTGCGCATCGCCACGGCGGAGACTTGGCGCGACAAGGCCACGGGCGAGCGCAAGGAGCGCACCGAGT
GGCATAATGTGGTGATCTTCAACGAAGGCCTTGCCCGTATTGCCGAGCAATATCTGAAGAAGGGCTCGAAGGTCTATATC
GAGGGCCAGTTGCAGACCCGCAAATACAACGACGCTTCGGGCGCCGAGAAATATTCCACCGAGATCGTGCTGCAGCGCTA
TCGCGGCGAGATGACGCTTCTGGATGGACGAGGCGGCGGTGAAGGTGGCAGCGGCAGTTCCGGCGGCTACCAGGGCAATG
ATTTCGGCTCATCGAGCCCAATGGAGCGTCGCCCGGCGCCGGCCAGCGCGAGCAAATACACCTCCGCCGACATGGATGAC
GATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.549
  ssb Glaesserella parasuis strain SC1401

44.974

100

0.518
  ssb Neisseria meningitidis MC58

43.956

100

0.488
  ssb Neisseria gonorrhoeae MS11

43.575

100

0.476

Multiple sequence alignment