Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XQ_RS09045 Genome accession   NZ_CP178739
Coordinates   2025655..2026203 (+) Length   182 a.a.
NCBI ID   WP_187514540.1    Uniprot ID   -
Organism   Sodalis sp. RH14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2020655..2031203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XQ_RS09030 (ACL2XQ_09030) - 2021690..2022430 (+) 741 WP_047609017.1 PFL_4669 family integrating conjugative element protein -
  ACL2XQ_RS09035 (ACL2XQ_09035) - 2022441..2024453 (+) 2013 WP_187514541.1 DNA topoisomerase III -
  ACL2XQ_RS09040 (ACL2XQ_09040) - 2025079..2025579 (+) 501 WP_047609019.1 STY4534 family ICE replication protein -
  ACL2XQ_RS09045 (ACL2XQ_09045) ssb 2025655..2026203 (+) 549 WP_187514540.1 single-stranded DNA-binding protein Machinery gene
  ACL2XQ_RS09050 (ACL2XQ_09050) - 2026291..2026926 (+) 636 WP_187514539.1 hypothetical protein -
  ACL2XQ_RS09055 (ACL2XQ_09055) - 2027026..2027457 (+) 432 WP_047609022.1 DUF29 domain-containing protein -
  ACL2XQ_RS09060 (ACL2XQ_09060) - 2027693..2028943 (+) 1251 WP_187514538.1 TcpQ domain-containing protein -
  ACL2XQ_RS09065 (ACL2XQ_09065) pilM 2028943..2029380 (+) 438 WP_187514537.1 type IV pilus biogenesis protein PilM -
  ACL2XQ_RS09070 (ACL2XQ_09070) - 2029392..2031080 (+) 1689 WP_187514536.1 PilN family type IVB pilus formation outer membrane protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19952.26 Da        Isoelectric Point: 6.2416

>NTDB_id=1091275 ACL2XQ_RS09045 WP_187514540.1 2025655..2026203(+) (ssb) [Sodalis sp. RH14]
MSSRGVNKVILIGFLGQEPEVRYLPNGMAVTNISLATSESWRDKQTGEEKERTEWHRVVLFGKLAEIAGEYLHKGSQVYI
EGQLQTRKWTDNAGVERWTTEIVVKQQGTMQMLGSNNRTNTSGSGQPANKQHSAAAPAQSGTPQSQSAPQSMGNEPPMDF
EDDIPFLGYGYGVCRGALYGIS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1091275 ACL2XQ_RS09045 WP_187514540.1 2025655..2026203(+) (ssb) [Sodalis sp. RH14]
ATGTCCAGTCGCGGCGTAAACAAAGTTATCCTGATCGGTTTTTTAGGGCAGGAACCTGAAGTTCGTTATCTTCCAAACGG
TATGGCAGTGACGAACATTTCATTGGCCACGTCTGAATCCTGGCGTGATAAACAAACAGGCGAAGAGAAAGAGCGTACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAGCTTGCTGAAATCGCCGGAGAATACCTGCATAAAGGTTCTCAGGTTTACATC
GAAGGCCAGTTGCAAACCCGTAAGTGGACTGACAATGCAGGGGTCGAACGCTGGACAACTGAAATCGTGGTCAAACAGCA
GGGCACAATGCAGATGCTGGGCAGCAACAATCGCACCAACACCAGTGGAAGTGGTCAGCCTGCAAATAAACAGCATTCTG
CTGCAGCGCCTGCGCAGAGCGGGACACCTCAGTCACAGTCAGCGCCGCAGTCTATGGGCAATGAACCGCCGATGGATTTT
GAAGACGACATCCCGTTCCTTGGTTATGGATATGGAGTATGTCGCGGCGCGCTTTACGGTATTTCCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.088

100

0.621
  ssb Glaesserella parasuis strain SC1401

46.486

100

0.473
  ssb Neisseria meningitidis MC58

44.886

96.703

0.434
  ssb Neisseria gonorrhoeae MS11

44.886

96.703

0.434

Multiple sequence alignment