Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XQ_RS00510 Genome accession   NZ_CP178739
Coordinates   115283..115849 (+) Length   188 a.a.
NCBI ID   WP_413739922.1    Uniprot ID   -
Organism   Sodalis sp. RH14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 110283..120849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XQ_RS00495 (ACL2XQ_00495) - 110621..111463 (+) 843 WP_413739921.1 BtpA/SgcQ family protein -
  ACL2XQ_RS00500 (ACL2XQ_00500) - 111466..112110 (+) 645 WP_410012602.1 TenA family protein -
  ACL2XQ_RS00505 (ACL2XQ_00505) uvrA 112167..115022 (-) 2856 WP_410012601.1 excinuclease ABC subunit UvrA -
  ACL2XQ_RS00510 (ACL2XQ_00510) ssb 115283..115849 (+) 567 WP_413739922.1 single-stranded DNA-binding protein Machinery gene
  ACL2XQ_RS00515 (ACL2XQ_00515) - 116464..118344 (+) 1881 WP_410012599.1 group II intron reverse transcriptase -
  ACL2XQ_RS00520 (ACL2XQ_00520) - 118600..120144 (-) 1545 WP_413739923.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19411.46 Da        Isoelectric Point: 5.2456

>NTDB_id=1091266 ACL2XQ_RS00510 WP_413739922.1 115283..115849(+) (ssb) [Sodalis sp. RH14]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAAGAGAGAGGGQQGWGQPQQPQGGNAQFSGNPGGAAPAAP
AAGRPAAQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1091266 ACL2XQ_RS00510 WP_413739922.1 115283..115849(+) (ssb) [Sodalis sp. RH14]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTACATGCCGAACGG
TGGCGCCGTGGCCAACATGACTCTGGCCACTTCCGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAAAAAACGG
AATGGCACCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCGCGTTGCAAACGCGTAAATGGACCGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGCCAGGGCGGCGGCGCGGCGGGTGCCGGCGCGGGCGCGGGCGGCGGCCAGCAGG
GCTGGGGCCAGCCGCAGCAGCCGCAGGGCGGCAACGCGCAGTTCAGCGGCAATCCTGGCGGCGCGGCGCCGGCAGCGCCC
GCGGCAGGTCGTCCCGCCGCGCAGAATAATGCGCCGGCCGCGGGCAATGAGCCGCCGATGGATTTTGACGACGATATCCC
GTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.492

100

0.676
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.559
  ssb Neisseria gonorrhoeae MS11

47.027

98.404

0.463
  ssb Neisseria meningitidis MC58

46.739

97.872

0.457

Multiple sequence alignment