Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XR_RS24765 Genome accession   NZ_CP178736
Coordinates   5360931..5361506 (-) Length   191 a.a.
NCBI ID   WP_413736116.1    Uniprot ID   -
Organism   Sodalis sp. RH17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5355931..5366506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XR_RS24735 (ACL2XR_24735) - 5356356..5357276 (+) 921 WP_413736109.1 LysR family transcriptional regulator -
  ACL2XR_RS24740 (ACL2XR_24740) - 5357304..5358062 (-) 759 WP_413736110.1 SDR family NAD(P)-dependent oxidoreductase -
  ACL2XR_RS24745 (ACL2XR_24745) - 5358199..5359113 (+) 915 WP_413736112.1 LysR substrate-binding domain-containing protein -
  ACL2XR_RS24750 (ACL2XR_24750) - 5359295..5359507 (+) 213 WP_413739287.1 hypothetical protein -
  ACL2XR_RS24755 (ACL2XR_24755) - 5359562..5360119 (+) 558 WP_413736114.1 helix-turn-helix transcriptional regulator -
  ACL2XR_RS24760 (ACL2XR_24760) - 5360192..5360662 (+) 471 WP_413736115.1 hypothetical protein -
  ACL2XR_RS24765 (ACL2XR_24765) ssb 5360931..5361506 (-) 576 WP_413736116.1 single-stranded DNA-binding protein Machinery gene
  ACL2XR_RS24770 (ACL2XR_24770) - 5361581..5361763 (+) 183 WP_413736117.1 hypothetical protein -
  ACL2XR_RS24775 (ACL2XR_24775) uvrA 5361756..5364611 (+) 2856 WP_413736118.1 excinuclease ABC subunit UvrA -
  ACL2XR_RS24780 (ACL2XR_24780) - 5364683..5365327 (-) 645 WP_413736119.1 TenA family protein -
  ACL2XR_RS24785 (ACL2XR_24785) - 5365330..5366172 (-) 843 WP_413736120.1 BtpA/SgcQ family protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19809.88 Da        Isoelectric Point: 5.2456

>NTDB_id=1091218 ACL2XR_RS24765 WP_413736116.1 5360931..5361506(-) (ssb) [Sodalis sp. RH17]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGAAGAGAGGNAGGGQQGGWGQPQQPQGNNAQFSGNPGSAAPA
NPPAGRPAAQNNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1091218 ACL2XR_RS24765 WP_413736116.1 5360931..5361506(-) (ssb) [Sodalis sp. RH17]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGGAATCTGGGCCAGGATCCGGAAGTCCGCTACATGCCGAACGG
TGGTGCGGTGGCCAATATGACCCTGGCCACCTCCGAGAGCTGGCGCGACAAGCAAACCGGCGAAACCAAGGAAAAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCGGGCGAGTACCTGAAAAAAGGCTCGCAGGTCTATATC
GAAGGGGCGTTGCAAACCCGTAAATGGACCGATCAGGCCGGCGTGGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGCCGTCAGGGCGGCGCGGCGGGCGCTGGTGCGGGCGGCAATGCCGGCGGCGGCCAGC
AGGGCGGTTGGGGCCAGCCACAGCAGCCCCAGGGCAATAACGCGCAGTTCAGCGGCAATCCGGGCAGCGCGGCGCCCGCC
AATCCTCCGGCCGGTCGTCCCGCGGCGCAGAACAACAATGCGCCGGCTGCGGGCAATGAACCCCCGATGGATTTTGACGA
CGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.104

100

0.654
  ssb Glaesserella parasuis strain SC1401

54.737

99.476

0.545
  ssb Neisseria meningitidis MC58

46.524

97.906

0.455
  ssb Neisseria gonorrhoeae MS11

45.989

97.906

0.45

Multiple sequence alignment