Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL2XF_RS19145 Genome accession   NZ_CP178734
Coordinates   4248284..4248850 (-) Length   188 a.a.
NCBI ID   WP_413727367.1    Uniprot ID   -
Organism   Sodalis sp. RH19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4243284..4253850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XF_RS19125 (ACL2XF_19125) - 4243948..4244868 (+) 921 WP_413727364.1 ABC transporter permease -
  ACL2XF_RS19130 (ACL2XF_19130) - 4244865..4245671 (+) 807 WP_410012596.1 ABC transporter ATP-binding protein -
  ACL2XF_RS19135 (ACL2XF_19135) - 4245671..4246552 (+) 882 WP_413727365.1 carbon-nitrogen hydrolase family protein -
  ACL2XF_RS19140 (ACL2XF_19140) - 4246576..4248120 (+) 1545 WP_413727366.1 amidohydrolase family protein -
  ACL2XF_RS19145 (ACL2XF_19145) ssb 4248284..4248850 (-) 567 WP_413727367.1 single-stranded DNA-binding protein Machinery gene
  ACL2XF_RS19150 (ACL2XF_19150) uvrA 4249111..4251966 (+) 2856 WP_410012601.1 excinuclease ABC subunit UvrA -
  ACL2XF_RS19155 (ACL2XF_19155) - 4252023..4252667 (-) 645 WP_410012602.1 TenA family protein -
  ACL2XF_RS19160 (ACL2XF_19160) - 4252670..4253512 (-) 843 WP_413727368.1 BtpA/SgcQ family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19441.49 Da        Isoelectric Point: 5.2456

>NTDB_id=1091173 ACL2XF_RS19145 WP_413727367.1 4248284..4248850(-) (ssb) [Sodalis sp. RH19]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQGGQERYTTEVVVNVGGTMQMLGGRQGGGAAGAGAGAGGGQQGWGQPQQPQGGNAQFSGNPGGAAPAAP
AASRPAAQNNAPAAGNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1091173 ACL2XF_RS19145 WP_413727367.1 4248284..4248850(-) (ssb) [Sodalis sp. RH19]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAATCTGGGCCAGGATCCGGAAGTCCGCTACATGCCGAACGG
TGGCGCCGTGGCCAACATGACTCTGGCCACTTCCGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAAAAAACGG
AATGGCACCGCGTGGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCGCGTTGCAAACGCGTAAATGGACCGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGCCAGGGCGGCGGCGCGGCGGGTGCCGGCGCGGGCGCGGGCGGCGGCCAGCAGG
GCTGGGGCCAGCCGCAGCAGCCGCAGGGCGGCAACGCGCAGTTCAGCGGCAATCCGGGCGGCGCGGCGCCGGCAGCGCCC
GCGGCCAGTCGTCCCGCCGCGCAGAACAATGCGCCGGCCGCGGGCAATGAGCCGCCGATGGATTTTGACGACGATATTCC
GTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.492

100

0.676
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.559
  ssb Neisseria gonorrhoeae MS11

47.027

98.404

0.463
  ssb Neisseria meningitidis MC58

46.739

97.872

0.457

Multiple sequence alignment