Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACL6ER_RS20440 Genome accession   NZ_CP178717
Coordinates   4060116..4060634 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus inaquosorum strain SY1167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4055116..4065634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS20415 (ACL6ER_20415) - 4056155..4057510 (+) 1356 WP_225515380.1 MFS transporter -
  ACL6ER_RS20420 (ACL6ER_20420) - 4057584..4057964 (-) 381 WP_003236616.1 VOC family protein -
  ACL6ER_RS20425 (ACL6ER_20425) - 4058020..4058955 (-) 936 WP_225515379.1 LacI family DNA-binding transcriptional regulator -
  ACL6ER_RS20430 (ACL6ER_20430) xth 4059014..4059772 (-) 759 WP_060399971.1 exodeoxyribonuclease III -
  ACL6ER_RS20435 (ACL6ER_20435) rpsR 4059834..4060073 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACL6ER_RS20440 (ACL6ER_20440) ssbA 4060116..4060634 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACL6ER_RS20445 (ACL6ER_20445) rpsF 4060675..4060962 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  ACL6ER_RS20450 (ACL6ER_20450) ychF 4061073..4062173 (-) 1101 WP_003236624.1 redox-regulated ATPase YchF -
  ACL6ER_RS20455 (ACL6ER_20455) - 4062300..4064303 (-) 2004 WP_268291848.1 molybdopterin-dependent oxidoreductase -
  ACL6ER_RS20460 (ACL6ER_20460) - 4064354..4064560 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1090882 ACL6ER_RS20440 WP_003219228.1 4060116..4060634(-) (ssbA) [Bacillus inaquosorum strain SY1167]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1090882 ACL6ER_RS20440 WP_003219228.1 4060116..4060634(-) (ssbA) [Bacillus inaquosorum strain SY1167]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTAAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment