Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACL6ER_RS17565 Genome accession   NZ_CP178717
Coordinates   3492270..3492992 (-) Length   240 a.a.
NCBI ID   WP_232918668.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3487270..3497992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS17530 (ACL6ER_17530) fliW 3487417..3487848 (-) 432 WP_014115344.1 flagellar assembly protein FliW -
  ACL6ER_RS17535 (ACL6ER_17535) - 3487882..3488445 (-) 564 WP_003235445.1 DUF6470 family protein -
  ACL6ER_RS17540 (ACL6ER_17540) flgL 3488492..3489388 (-) 897 WP_268272752.1 flagellar hook-associated protein FlgL -
  ACL6ER_RS17545 (ACL6ER_17545) flgK 3489398..3490915 (-) 1518 WP_413325354.1 flagellar hook-associated protein FlgK -
  ACL6ER_RS17550 (ACL6ER_17550) flgN 3490934..3491416 (-) 483 WP_268272750.1 flagellar protein FlgN -
  ACL6ER_RS17555 (ACL6ER_17555) flgM 3491432..3491698 (-) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6ER_RS17560 (ACL6ER_17560) - 3491778..3492197 (-) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  ACL6ER_RS17565 (ACL6ER_17565) comFC 3492270..3492992 (-) 723 WP_232918668.1 ComF family protein Machinery gene
  ACL6ER_RS17570 (ACL6ER_17570) comFB 3492956..3493252 (-) 297 WP_232918667.1 late competence protein ComFB -
  ACL6ER_RS17575 (ACL6ER_17575) comFA 3493321..3494703 (-) 1383 WP_268331960.1 ATP-dependent helicase ComFA Machinery gene
  ACL6ER_RS17580 (ACL6ER_17580) - 3494811..3495656 (-) 846 WP_148982500.1 DegV family protein -
  ACL6ER_RS17585 (ACL6ER_17585) degU 3495754..3496443 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6ER_RS17590 (ACL6ER_17590) degS 3496526..3497683 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27352.65 Da        Isoelectric Point: 9.3359

>NTDB_id=1090872 ACL6ER_RS17565 WP_232918668.1 3492270..3492992(-) (comFC) [Bacillus inaquosorum strain SY1167]
MPNKAGGGIHKLICLLCDSQFSQAVTWSALFLLKPDEKVCHSCRSKFKKITGQICTLCGRPQSVHAVCRDCEVWKSRVSD
SLLLRQNRSVYTYNEMMKETLSRFKFRGDAEIINAFKSDFSSAFSEVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLNFAARCLLEKGKARSVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1090872 ACL6ER_RS17565 WP_232918668.1 3492270..3492992(-) (comFC) [Bacillus inaquosorum strain SY1167]
ATGCCAAACAAAGCAGGAGGAGGTATTCATAAACTGATCTGTCTATTGTGCGATTCACAATTTTCTCAAGCTGTTACATG
GAGCGCCCTTTTTTTATTAAAGCCGGACGAAAAGGTCTGTCATTCCTGCAGAAGCAAATTTAAGAAAATCACAGGACAAA
TCTGCACCTTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAGAGATTGCGAGGTGTGGAAATCAAGGGTCAGTGAC
AGTTTGCTGCTCCGCCAAAACCGTTCAGTTTACACATATAATGAAATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAGCCTTCTCAGAGGTTTACCCCGATAAGCATTTTG
TTCTCGTTCCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCGCAGCTCCTGGCAGAATGCTTA
GACCGTCCTATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
GGAGCGTATTTTTGATACAAAAAACAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGAATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCCGTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

91.25

100

0.913

Multiple sequence alignment