Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACL6ER_RS17575 Genome accession   NZ_CP178717
Coordinates   3493321..3494703 (-) Length   460 a.a.
NCBI ID   WP_268331960.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3488321..3499703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS17540 (ACL6ER_17540) flgL 3488492..3489388 (-) 897 WP_268272752.1 flagellar hook-associated protein FlgL -
  ACL6ER_RS17545 (ACL6ER_17545) flgK 3489398..3490915 (-) 1518 WP_413325354.1 flagellar hook-associated protein FlgK -
  ACL6ER_RS17550 (ACL6ER_17550) flgN 3490934..3491416 (-) 483 WP_268272750.1 flagellar protein FlgN -
  ACL6ER_RS17555 (ACL6ER_17555) flgM 3491432..3491698 (-) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6ER_RS17560 (ACL6ER_17560) - 3491778..3492197 (-) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  ACL6ER_RS17565 (ACL6ER_17565) comFC 3492270..3492992 (-) 723 WP_232918668.1 ComF family protein Machinery gene
  ACL6ER_RS17570 (ACL6ER_17570) comFB 3492956..3493252 (-) 297 WP_232918667.1 late competence protein ComFB -
  ACL6ER_RS17575 (ACL6ER_17575) comFA 3493321..3494703 (-) 1383 WP_268331960.1 ATP-dependent helicase ComFA Machinery gene
  ACL6ER_RS17580 (ACL6ER_17580) - 3494811..3495656 (-) 846 WP_148982500.1 DegV family protein -
  ACL6ER_RS17585 (ACL6ER_17585) degU 3495754..3496443 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6ER_RS17590 (ACL6ER_17590) degS 3496526..3497683 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  ACL6ER_RS17595 (ACL6ER_17595) - 3497901..3498554 (+) 654 WP_003235469.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52098.10 Da        Isoelectric Point: 9.8855

>NTDB_id=1090873 ACL6ER_RS17575 WP_268331960.1 3493321..3494703(-) (comFA) [Bacillus inaquosorum strain SY1167]
MIMPAEKNISFSKELQQTLQSRQLLRTELPFSDEMIEWHIKNGYIAAQNSISVNKRGYRCNRCGQNDQRYFSFYHSSGKN
QLYCRSCVMMGRVSEDVPLYSWIEEDEPNWQPIKLTWNGQLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHKKPLPEPRFVWCGSWKKKLNRNKVPLAVKR
WIAFHVKEGRPVFLFVPSVSVLKKAGACFKDVNCRIATVHAEDKQRKEKVQQFRDGQLDLLLTTTILERGVTVPEVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARRHIKEMNDLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1090873 ACL6ER_RS17575 WP_268331960.1 3493321..3494703(-) (comFA) [Bacillus inaquosorum strain SY1167]
CTGATTATGCCAGCTGAAAAGAACATTTCTTTCTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCAGTTGCTCAGAAC
TGAACTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAAAATGGCTATATCGCTGCTCAAAACTCTATATCCGTAA
ATAAACGGGGGTATAGGTGTAATAGGTGCGGCCAAAATGACCAGCGGTATTTTTCTTTTTATCATTCATCTGGAAAGAAT
CAGCTGTATTGCCGTTCTTGTGTCATGATGGGCAGAGTGAGTGAAGATGTTCCTTTATATTCATGGATAGAGGAGGATGA
ACCCAATTGGCAGCCTATCAAGCTTACGTGGAATGGCCAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AGGCCATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAGATGCTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGACTGCGTGTTTGTATTGCCACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGACT
CAAGGCTGCCTTTCAGGGTGCTGATATTTCAGCGCTTTATGGAGGAAGCGAGGACAAAGGGCGGTTATCTCCGCTTATGA
TTTCCACTACACATCAACTCTTGCGATATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACTCTTGTTTACCTAAGTGCAACACC
CCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGTTACACTCAGTTCGGATTCCAGCAAGACACCACAAAAAACCTT
TGCCAGAACCGCGCTTTGTATGGTGCGGAAGCTGGAAAAAGAAATTAAACCGAAACAAAGTTCCGTTAGCGGTAAAAAGA
TGGATAGCGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTTGTTCCCTCCGTTTCTGTTCTGAAAAAGGCAGGTGC
ATGCTTTAAAGATGTTAATTGCAGAATTGCGACTGTACATGCGGAAGATAAGCAAAGAAAAGAGAAAGTACAGCAATTCA
GAGACGGCCAGCTTGATCTCTTACTCACAACAACAATACTAGAAAGAGGCGTCACGGTCCCCGAGGTGCAGACAGGTGTA
TTAGGGGCAGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
GGATGGTGATGTCATTTTCTTTCACTACGGAAAAACAAAGAGTATGCTGGATGCAAGAAGGCATATAAAAGAAATGAATG
ACTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

89.783

100

0.898

Multiple sequence alignment