Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACL6ER_RS17585 Genome accession   NZ_CP178717
Coordinates   3495754..3496443 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain SY1167     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3490754..3501443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS17550 (ACL6ER_17550) flgN 3490934..3491416 (-) 483 WP_268272750.1 flagellar protein FlgN -
  ACL6ER_RS17555 (ACL6ER_17555) flgM 3491432..3491698 (-) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6ER_RS17560 (ACL6ER_17560) - 3491778..3492197 (-) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  ACL6ER_RS17565 (ACL6ER_17565) comFC 3492270..3492992 (-) 723 WP_232918668.1 ComF family protein Machinery gene
  ACL6ER_RS17570 (ACL6ER_17570) comFB 3492956..3493252 (-) 297 WP_232918667.1 late competence protein ComFB -
  ACL6ER_RS17575 (ACL6ER_17575) comFA 3493321..3494703 (-) 1383 WP_268331960.1 ATP-dependent helicase ComFA Machinery gene
  ACL6ER_RS17580 (ACL6ER_17580) - 3494811..3495656 (-) 846 WP_148982500.1 DegV family protein -
  ACL6ER_RS17585 (ACL6ER_17585) degU 3495754..3496443 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6ER_RS17590 (ACL6ER_17590) degS 3496526..3497683 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  ACL6ER_RS17595 (ACL6ER_17595) - 3497901..3498554 (+) 654 WP_003235469.1 YigZ family protein -
  ACL6ER_RS17600 (ACL6ER_17600) - 3498554..3499711 (+) 1158 WP_268288369.1 LCP family protein -
  ACL6ER_RS17605 (ACL6ER_17605) - 3499783..3500859 (-) 1077 WP_003235474.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090874 ACL6ER_RS17585 WP_003219701.1 3495754..3496443(-) (degU) [Bacillus inaquosorum strain SY1167]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090874 ACL6ER_RS17585 WP_003219701.1 3495754..3496443(-) (degU) [Bacillus inaquosorum strain SY1167]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGCGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCTGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment