Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACL6ER_RS11635 Genome accession   NZ_CP178717
Coordinates   2375962..2376297 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus inaquosorum strain SY1167     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2370962..2381297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS11615 (ACL6ER_11615) gcvT 2371550..2372638 (-) 1089 WP_003236933.1 glycine cleavage system aminomethyltransferase GcvT -
  ACL6ER_RS11620 (ACL6ER_11620) - 2373082..2374755 (+) 1674 WP_003236934.1 DEAD/DEAH box helicase -
  ACL6ER_RS11625 (ACL6ER_11625) - 2374776..2375570 (+) 795 WP_268332590.1 YqhG family protein -
  ACL6ER_RS11630 (ACL6ER_11630) sinI 2375755..2375928 (+) 174 WP_003226347.1 anti-repressor SinI Regulator
  ACL6ER_RS11635 (ACL6ER_11635) sinR 2375962..2376297 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACL6ER_RS11640 (ACL6ER_11640) tasA 2376392..2377177 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  ACL6ER_RS11645 (ACL6ER_11645) sipW 2377241..2377813 (-) 573 WP_080429111.1 signal peptidase I SipW -
  ACL6ER_RS11650 (ACL6ER_11650) tapA 2377797..2378561 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6ER_RS11655 (ACL6ER_11655) - 2378834..2379160 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  ACL6ER_RS11660 (ACL6ER_11660) - 2379202..2379381 (-) 180 WP_003236949.1 YqzE family protein -
  ACL6ER_RS11665 (ACL6ER_11665) comGG 2379452..2379826 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACL6ER_RS11670 (ACL6ER_11670) comGF 2379827..2380210 (-) 384 WP_413324720.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACL6ER_RS11675 (ACL6ER_11675) comGE 2380236..2380583 (-) 348 WP_225514215.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACL6ER_RS11680 (ACL6ER_11680) comGD 2380567..2380998 (-) 432 WP_268276766.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACL6ER_RS11685 (ACL6ER_11685) comGC 2380988..2381284 (-) 297 WP_019258890.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1090847 ACL6ER_RS11635 WP_003226345.1 2375962..2376297(+) (sinR) [Bacillus inaquosorum strain SY1167]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1090847 ACL6ER_RS11635 WP_003226345.1 2375962..2376297(+) (sinR) [Bacillus inaquosorum strain SY1167]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment