Detailed information    

insolico Bioinformatically predicted

Overview


Name   sinI   Type   Regulator
Locus tag   ACL6ER_RS11630 Genome accession   NZ_CP178717
Coordinates   2375755..2375928 (+) Length   57 a.a.
NCBI ID   WP_003226347.1    Uniprot ID   G4NQ83
Organism   Bacillus inaquosorum strain SY1167     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context


Location: 2370755..2380928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS11615 (ACL6ER_11615) gcvT 2371550..2372638 (-) 1089 WP_003236933.1 glycine cleavage system aminomethyltransferase GcvT -
  ACL6ER_RS11620 (ACL6ER_11620) - 2373082..2374755 (+) 1674 WP_003236934.1 DEAD/DEAH box helicase -
  ACL6ER_RS11625 (ACL6ER_11625) - 2374776..2375570 (+) 795 WP_268332590.1 YqhG family protein -
  ACL6ER_RS11630 (ACL6ER_11630) sinI 2375755..2375928 (+) 174 WP_003226347.1 anti-repressor SinI Regulator
  ACL6ER_RS11635 (ACL6ER_11635) sinR 2375962..2376297 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACL6ER_RS11640 (ACL6ER_11640) tasA 2376392..2377177 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  ACL6ER_RS11645 (ACL6ER_11645) sipW 2377241..2377813 (-) 573 WP_080429111.1 signal peptidase I SipW -
  ACL6ER_RS11650 (ACL6ER_11650) tapA 2377797..2378561 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6ER_RS11655 (ACL6ER_11655) - 2378834..2379160 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  ACL6ER_RS11660 (ACL6ER_11660) - 2379202..2379381 (-) 180 WP_003236949.1 YqzE family protein -
  ACL6ER_RS11665 (ACL6ER_11665) comGG 2379452..2379826 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACL6ER_RS11670 (ACL6ER_11670) comGF 2379827..2380210 (-) 384 WP_413324720.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACL6ER_RS11675 (ACL6ER_11675) comGE 2380236..2380583 (-) 348 WP_225514215.1 competence type IV pilus minor pilin ComGE Machinery gene

Sequence


Protein


Download         Length: 57 a.a.        Molecular weight: 6632.64 Da        Isoelectric Point: 8.6596

>NTDB_id=1090846 ACL6ER_RS11630 WP_003226347.1 2375755..2375928(+) (sinI) [Bacillus inaquosorum strain SY1167]
MKNAKQEHFELDQEWVELMMKAKEANISPEEIRKYLLLNKKSAHPGPAARSHTVNPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=1090846 ACL6ER_RS11630 WP_003226347.1 2375755..2375928(+) (sinI) [Bacillus inaquosorum strain SY1167]
ATGAAAAATGCAAAACAAGAGCACTTCGAATTAGATCAAGAATGGGTTGAATTAATGATGAAAGCCAAAGAGGCAAATAT
CAGCCCGGAAGAAATACGAAAATATTTACTTTTAAACAAAAAGTCTGCTCATCCTGGTCCGGCAGCCAGAAGTCATACCG
TAAATCCTTTCTGA

Domains


Predicted by InterproScan.

(11-36)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G4NQ83

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

96.491

100

0.965


Multiple sequence alignment