Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACL6ER_RS11680 Genome accession   NZ_CP178717
Coordinates   2380567..2380998 (-) Length   143 a.a.
NCBI ID   WP_268276766.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2375567..2385998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS11630 (ACL6ER_11630) sinI 2375755..2375928 (+) 174 WP_003226347.1 anti-repressor SinI Regulator
  ACL6ER_RS11635 (ACL6ER_11635) sinR 2375962..2376297 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACL6ER_RS11640 (ACL6ER_11640) tasA 2376392..2377177 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  ACL6ER_RS11645 (ACL6ER_11645) sipW 2377241..2377813 (-) 573 WP_080429111.1 signal peptidase I SipW -
  ACL6ER_RS11650 (ACL6ER_11650) tapA 2377797..2378561 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6ER_RS11655 (ACL6ER_11655) - 2378834..2379160 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  ACL6ER_RS11660 (ACL6ER_11660) - 2379202..2379381 (-) 180 WP_003236949.1 YqzE family protein -
  ACL6ER_RS11665 (ACL6ER_11665) comGG 2379452..2379826 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACL6ER_RS11670 (ACL6ER_11670) comGF 2379827..2380210 (-) 384 WP_413324720.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACL6ER_RS11675 (ACL6ER_11675) comGE 2380236..2380583 (-) 348 WP_225514215.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACL6ER_RS11680 (ACL6ER_11680) comGD 2380567..2380998 (-) 432 WP_268276766.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACL6ER_RS11685 (ACL6ER_11685) comGC 2380988..2381284 (-) 297 WP_019258890.1 comG operon protein ComGC Machinery gene
  ACL6ER_RS11690 (ACL6ER_11690) comGB 2381298..2382335 (-) 1038 WP_225514213.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACL6ER_RS11695 (ACL6ER_11695) comGA 2382322..2383392 (-) 1071 WP_225514212.1 competence protein ComGA Machinery gene
  ACL6ER_RS11700 (ACL6ER_11700) - 2383608..2384018 (-) 411 WP_268332592.1 CBS domain-containing protein -
  ACL6ER_RS11705 (ACL6ER_11705) corA 2384081..2385025 (-) 945 WP_268291811.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16069.58 Da        Isoelectric Point: 7.3152

>NTDB_id=1090851 ACL6ER_RS11680 WP_268276766.1 2380567..2380998(-) (comGD) [Bacillus inaquosorum strain SY1167]
MNIKLNEEEGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAAWQLKNDIMLAQQTAISSHQRTKILFQKKEYQLV
MDDIVIERPYTTGLSIEPLTLKDRLEFNEKGHPNAGGKIQVKGHAAYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1090851 ACL6ER_RS11680 WP_268276766.1 2380567..2380998(-) (comGD) [Bacillus inaquosorum strain SY1167]
TTGAACATTAAATTAAACGAGGAGGAGGGATTTACCCTTTTAGAAAGCTTACTTGTGTTAAGTCTCGCCTCTATCCTCTT
GATTGCCGTGTTTACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGTCAGGCGGCTTGGCAGCTGAAAAACGATA
TTATGCTTGCGCAGCAGACTGCTATTTCCAGTCATCAAAGAACAAAAATTCTCTTTCAGAAAAAAGAATATCAATTAGTC
ATGGATGATATTGTGATTGAACGTCCGTATACAACGGGACTTTCTATAGAACCGCTGACATTAAAAGACCGTTTGGAATT
TAACGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACAAGTAAAAGGACATGCCGCTTATGACATCACAGTTTATTTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

90.21

100

0.902

Multiple sequence alignment