Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACL6EQ_RS20345 Genome accession   NZ_CP178716
Coordinates   3940629..3941147 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SY1483     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3935629..3946147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS20315 (ACL6EQ_20315) yyaJ 3936132..3937487 (+) 1356 WP_014481501.1 MFS transporter -
  ACL6EQ_RS20320 (ACL6EQ_20320) maa 3937521..3938075 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  ACL6EQ_RS20325 (ACL6EQ_20325) yyaH 3938093..3938473 (-) 381 WP_076457323.1 VOC family protein -
  ACL6EQ_RS20330 (ACL6EQ_20330) ccpB 3938529..3939464 (-) 936 WP_076457322.1 transcriptional regulator CcpB -
  ACL6EQ_RS20335 (ACL6EQ_20335) xth 3939524..3940282 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  ACL6EQ_RS20340 (ACL6EQ_20340) rpsR 3940346..3940585 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACL6EQ_RS20345 (ACL6EQ_20345) ssbA 3940629..3941147 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACL6EQ_RS20350 (ACL6EQ_20350) rpsF 3941188..3941475 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  ACL6EQ_RS20355 (ACL6EQ_20355) ychF 3941586..3942686 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACL6EQ_RS20360 (ACL6EQ_20360) yyaE 3942813..3944816 (-) 2004 WP_257435430.1 molybdopterin-dependent oxidoreductase -
  ACL6EQ_RS20365 (ACL6EQ_20365) yyzM 3944867..3945073 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1090805 ACL6EQ_RS20345 WP_003219228.1 3940629..3941147(-) (ssbA) [Bacillus subtilis strain SY1483]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1090805 ACL6EQ_RS20345 WP_003219228.1 3940629..3941147(-) (ssbA) [Bacillus subtilis strain SY1483]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment