Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACLKML_RS18135 Genome accession   NZ_CP178628
Coordinates   2313714..2314301 (+) Length   195 a.a.
NCBI ID   WP_413284379.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2308714..2319301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS18115 (ACLKML_18115) panP 2309054..2310697 (-) 1644 WP_413284375.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ACLKML_RS18120 (ACLKML_18120) - 2310821..2311333 (-) 513 WP_413284376.1 hypothetical protein -
  ACLKML_RS18125 (ACLKML_18125) - 2311508..2312413 (-) 906 WP_413284377.1 lysine exporter LysO family protein -
  ACLKML_RS18130 (ACLKML_18130) - 2312437..2313357 (-) 921 WP_413284378.1 HDOD domain-containing protein -
  ACLKML_RS18135 (ACLKML_18135) tfoX 2313714..2314301 (+) 588 WP_413284379.1 TfoX/Sxy family DNA transformation protein Regulator
  ACLKML_RS18140 (ACLKML_18140) - 2314484..2315512 (+) 1029 WP_413284380.1 ABC transporter permease subunit -
  ACLKML_RS18145 (ACLKML_18145) - 2315514..2316560 (+) 1047 WP_413284381.1 ABC transporter permease -
  ACLKML_RS18150 (ACLKML_18150) - 2316587..2318413 (+) 1827 WP_413284382.1 extracellular solute-binding protein -
  ACLKML_RS18155 (ACLKML_18155) - 2318441..2319253 (+) 813 WP_413284383.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22763.50 Da        Isoelectric Point: 9.8432

>NTDB_id=1090705 ACLKML_RS18135 WP_413284379.1 2313714..2314301(+) (tfoX) [Vibrio sp. MA40-2]
MDNLCFYEYAKKFGAYEKHSMFGGVGLFSDNAMYLLITDTHFYLRGGGILDSELVALGCSRYRHIKKQGIVTVNYYDITE
LYYQGYAGLSTLIRRSICISIEYREYYRLNRKKRLRDLPNMRLTLERMVIKSGVSDVDFFISLGAVGVYQKVKQQYGKKV
DYRLLWKFAGAINGVHWMLIDAKTKKELKRTYDSL

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1090705 ACLKML_RS18135 WP_413284379.1 2313714..2314301(+) (tfoX) [Vibrio sp. MA40-2]
ATGGATAATTTATGTTTTTATGAGTACGCAAAAAAATTTGGAGCTTATGAAAAGCACTCTATGTTTGGAGGTGTTGGCTT
GTTTTCTGACAATGCCATGTATTTATTAATAACAGATACACATTTCTATTTAAGAGGCGGAGGTATATTAGACAGTGAAT
TGGTAGCGCTCGGTTGCAGCCGATATCGTCATATTAAAAAGCAAGGAATAGTAACGGTAAACTATTATGATATTACAGAG
CTATACTATCAAGGCTATGCTGGACTCTCTACTCTTATTCGTCGCTCAATATGTATTTCAATAGAATATCGAGAGTATTA
TCGTTTGAATCGAAAAAAGAGACTTCGAGATCTGCCCAATATGCGGTTGACCTTAGAACGAATGGTTATAAAGTCAGGGG
TATCAGATGTCGATTTTTTTATTAGCCTTGGTGCGGTCGGGGTTTACCAAAAAGTTAAACAGCAATATGGTAAGAAGGTT
GATTATCGATTGCTATGGAAGTTTGCAGGAGCGATAAATGGTGTCCATTGGATGTTAATTGATGCCAAAACTAAAAAAGA
ACTAAAGCGCACGTACGATTCGCTCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-191)

TfoX N-terminal domain (TfoX_N)

(10-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

56.383

96.41

0.544
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

56.383

96.41

0.544
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

56.383

96.41

0.544
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

56.383

96.41

0.544
  tfoX Vibrio cholerae strain A1552

56.383

96.41

0.544
  tfoX Vibrio parahaemolyticus RIMD 2210633

54.255

96.41

0.523
  tfoX Vibrio campbellii strain DS40M4

53.723

96.41

0.518
  tfoX Aliivibrio fischeri ES114

50.82

93.846

0.477

Multiple sequence alignment