Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLKML_RS13485 Genome accession   NZ_CP178628
Coordinates   1273866..1274420 (+) Length   184 a.a.
NCBI ID   WP_413285732.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1268866..1279420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS13470 (ACLKML_13470) uvrA 1268944..1271781 (-) 2838 WP_413285729.1 excinuclease ABC subunit UvrA -
  ACLKML_RS13475 (ACLKML_13475) galU 1271937..1272812 (-) 876 WP_413285730.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACLKML_RS13480 (ACLKML_13480) - 1272931..1273569 (-) 639 WP_413285731.1 response regulator transcription factor -
  ACLKML_RS13485 (ACLKML_13485) ssb 1273866..1274420 (+) 555 WP_413285732.1 single-stranded DNA-binding protein Machinery gene
  ACLKML_RS13490 (ACLKML_13490) - 1274614..1274880 (-) 267 WP_413285733.1 LysE family translocator -
  ACLKML_RS13495 (ACLKML_13495) csrD 1275379..1277367 (+) 1989 WP_413285734.1 RNase E specificity factor CsrD -
  ACLKML_RS13500 (ACLKML_13500) - 1277590..1278633 (+) 1044 WP_413285735.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20168.32 Da        Isoelectric Point: 5.2358

>NTDB_id=1090695 ACLKML_RS13485 WP_413285732.1 1273866..1274420(+) (ssb) [Vibrio sp. MA40-2]
MASRGINKVILVGNLGGDPEVRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGTQAMGGGQPAQQQGNWGQPQQPVQQAQAPQQPAAPAQRAP
QQSPQQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1090695 ACLKML_RS13485 WP_413285732.1 1273866..1274420(+) (ssb) [Vibrio sp. MA40-2]
ATGGCGAGCCGTGGAATAAACAAAGTAATTTTGGTTGGCAACTTGGGTGGCGATCCAGAAGTTCGATATATGCCTAGTGG
TAGTGCTGTGGCAAATATTACCATTGCTACCTCAGAAAGCTGGAGAGATAAAGCGACAGGCGAGCAAAGAGAGAAAACCG
AGTGGCATAGAGTTGCTCTATTTGGCAAGTTAGCAGAAGTCGCTGGTGAGTATTTACGTAAAGGTTCACAAGTGTATATT
GAAGGTCAGCTTCAAACGCGTAAATGGCAAGATCAGAGTGGCCAAGATCGCTATACGACTGAAGTTGTGGTTCAAGGCTT
TAATGGTGTAATGCAAATGTTAGGCGGTCGTCAAGGAGGCACTCAAGCGATGGGTGGTGGACAACCAGCTCAACAGCAAG
GTAATTGGGGACAACCTCAGCAACCTGTGCAACAAGCTCAAGCGCCACAACAACCTGCTGCTCCTGCTCAACGAGCACCT
CAACAATCACCTCAGCAGTCTCAACCTCAATACAACGAACCACCAATGGATTTTGATGACGATATACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.032

100

0.799
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.576
  ssb Neisseria meningitidis MC58

46.448

99.457

0.462
  ssb Neisseria gonorrhoeae MS11

46.448

99.457

0.462

Multiple sequence alignment