Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACL66B_RS12210 Genome accession   NZ_CP178617
Coordinates   2385701..2385997 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain QXKL-3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2380701..2390997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS12165 (ACL66B_12165) tasA 2381109..2381894 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  ACL66B_RS12170 (ACL66B_12170) sipW 2381958..2382530 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ACL66B_RS12175 (ACL66B_12175) tapA 2382514..2383275 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  ACL66B_RS12180 (ACL66B_12180) yqzG 2383547..2383873 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACL66B_RS12185 (ACL66B_12185) spoIITA 2383915..2384094 (-) 180 WP_003230176.1 YqzE family protein -
  ACL66B_RS12190 (ACL66B_12190) comGG 2384165..2384539 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  ACL66B_RS12195 (ACL66B_12195) comGF 2384540..2384923 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  ACL66B_RS12200 (ACL66B_12200) comGE 2384949..2385296 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ACL66B_RS12205 (ACL66B_12205) comGD 2385280..2385711 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ACL66B_RS12210 (ACL66B_12210) comGC 2385701..2385997 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ACL66B_RS12215 (ACL66B_12215) comGB 2386011..2387048 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  ACL66B_RS12220 (ACL66B_12220) comGA 2387035..2388105 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ACL66B_RS12225 (ACL66B_12225) corA 2388516..2389469 (-) 954 WP_029317911.1 magnesium transporter CorA -
  ACL66B_RS12230 (ACL66B_12230) yqhB 2389612..2390940 (+) 1329 WP_041850018.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=1090568 ACL66B_RS12210 WP_003230162.1 2385701..2385997(-) (comGC) [Bacillus subtilis strain QXKL-3]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1090568 ACL66B_RS12210 WP_003230162.1 2385701..2385997(-) (comGC) [Bacillus subtilis strain QXKL-3]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment