Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACL66B_RS12160 Genome accession   NZ_CP178617
Coordinates   2380681..2381016 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain QXKL-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2375681..2386016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS12140 (ACL66B_12140) gcvT 2376274..2377362 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  ACL66B_RS12145 (ACL66B_12145) hepAA 2377803..2379476 (+) 1674 WP_041850014.1 DEAD/DEAH box helicase -
  ACL66B_RS12150 (ACL66B_12150) yqhG 2379497..2380291 (+) 795 WP_003230200.1 YqhG family protein -
  ACL66B_RS12155 (ACL66B_12155) sinI 2380474..2380647 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ACL66B_RS12160 (ACL66B_12160) sinR 2380681..2381016 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACL66B_RS12165 (ACL66B_12165) tasA 2381109..2381894 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  ACL66B_RS12170 (ACL66B_12170) sipW 2381958..2382530 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ACL66B_RS12175 (ACL66B_12175) tapA 2382514..2383275 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  ACL66B_RS12180 (ACL66B_12180) yqzG 2383547..2383873 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACL66B_RS12185 (ACL66B_12185) spoIITA 2383915..2384094 (-) 180 WP_003230176.1 YqzE family protein -
  ACL66B_RS12190 (ACL66B_12190) comGG 2384165..2384539 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  ACL66B_RS12195 (ACL66B_12195) comGF 2384540..2384923 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  ACL66B_RS12200 (ACL66B_12200) comGE 2384949..2385296 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ACL66B_RS12205 (ACL66B_12205) comGD 2385280..2385711 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ACL66B_RS12210 (ACL66B_12210) comGC 2385701..2385997 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1090563 ACL66B_RS12160 WP_003226345.1 2380681..2381016(+) (sinR) [Bacillus subtilis strain QXKL-3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1090563 ACL66B_RS12160 WP_003226345.1 2380681..2381016(+) (sinR) [Bacillus subtilis strain QXKL-3]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment