Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACKUFW_RS11775 Genome accession   NZ_CP178610
Coordinates   2440736..2441071 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMHT p116     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2435736..2446071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS11755 (ACKUFW_11755) gcvT 2436346..2437446 (-) 1101 WP_071391617.1 glycine cleavage system aminomethyltransferase GcvT -
  ACKUFW_RS11760 (ACKUFW_11760) - 2437870..2439540 (+) 1671 WP_046559872.1 DEAD/DEAH box helicase -
  ACKUFW_RS11765 (ACKUFW_11765) - 2439558..2440352 (+) 795 WP_071391615.1 YqhG family protein -
  ACKUFW_RS11770 (ACKUFW_11770) sinI 2440529..2440702 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACKUFW_RS11775 (ACKUFW_11775) sinR 2440736..2441071 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACKUFW_RS11780 (ACKUFW_11780) tasA 2441119..2441904 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACKUFW_RS11785 (ACKUFW_11785) sipW 2441968..2442552 (-) 585 WP_060562614.1 signal peptidase I SipW -
  ACKUFW_RS11790 (ACKUFW_11790) tapA 2442524..2443195 (-) 672 WP_202735627.1 amyloid fiber anchoring/assembly protein TapA -
  ACKUFW_RS11795 (ACKUFW_11795) - 2443454..2443783 (+) 330 WP_071391612.1 DUF3889 domain-containing protein -
  ACKUFW_RS11800 (ACKUFW_11800) - 2443823..2444002 (-) 180 WP_003153093.1 YqzE family protein -
  ACKUFW_RS11805 (ACKUFW_11805) comGG 2444059..2444436 (-) 378 WP_071391611.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACKUFW_RS11810 (ACKUFW_11810) comGF 2444437..2444832 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  ACKUFW_RS11815 (ACKUFW_11815) comGE 2444846..2445160 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACKUFW_RS11820 (ACKUFW_11820) comGD 2445144..2445581 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACKUFW_RS11825 (ACKUFW_11825) comGC 2445571..2445879 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1090479 ACKUFW_RS11775 WP_003153104.1 2440736..2441071(+) (sinR) [Bacillus velezensis strain GUMHT p116]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1090479 ACKUFW_RS11775 WP_003153104.1 2440736..2441071(+) (sinR) [Bacillus velezensis strain GUMHT p116]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment