Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACJQW4_RS08080 Genome accession   NZ_CP178606
Coordinates   1717703..1718107 (+) Length   134 a.a.
NCBI ID   WP_241628580.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712703..1723107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS08065 (ACJQW4_08065) rlmD 1713118..1714509 (+) 1392 WP_241628577.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ACJQW4_RS08070 (ACJQW4_08070) - 1714539..1716845 (+) 2307 WP_241628578.1 RelA/SpoT family protein -
  ACJQW4_RS08075 (ACJQW4_08075) mazG 1716923..1717678 (+) 756 WP_241628579.1 nucleoside triphosphate pyrophosphohydrolase -
  ACJQW4_RS08080 (ACJQW4_08080) comEA 1717703..1718107 (+) 405 WP_241628580.1 ComEA family DNA-binding protein Machinery gene
  ACJQW4_RS08085 (ACJQW4_08085) pcnB 1718241..1719692 (+) 1452 WP_241628581.1 polynucleotide adenylyltransferase PcnB -
  ACJQW4_RS08090 (ACJQW4_08090) folK 1719689..1720177 (+) 489 WP_241628582.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACJQW4_RS08095 (ACJQW4_08095) panB 1720221..1721030 (+) 810 WP_241628583.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACJQW4_RS08100 (ACJQW4_08100) panC 1721032..1721880 (+) 849 WP_241628585.1 pantoate--beta-alanine ligase -
  ACJQW4_RS08105 (ACJQW4_08105) rapZ 1721903..1722754 (+) 852 WP_241628588.1 RNase adapter RapZ -
  ACJQW4_RS08110 (ACJQW4_08110) - 1722751..1723020 (+) 270 WP_241628590.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15245.47 Da        Isoelectric Point: 10.6761

>NTDB_id=1090413 ACJQW4_RS08080 WP_241628580.1 1717703..1718107(+) (comEA) [Acinetobacter sp. A7.4]
MQRNFNRHRIVRVVTLFILMVLGLDHAIAQNFDQQYLNWKAQQQAQDARLGNSSSDANYYLSKPSLTPVSGNKIRLNSAS
AEQLQQLSGIGEKKAEAILQYRQQHGKFKTIEELQNIKGIGPKLLQKNKDRLAL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1090413 ACJQW4_RS08080 WP_241628580.1 1717703..1718107(+) (comEA) [Acinetobacter sp. A7.4]
ATGCAGCGAAATTTTAATCGGCATCGTATTGTACGAGTCGTCACGCTTTTTATCTTGATGGTTTTGGGATTGGATCATGC
AATCGCACAAAACTTTGATCAGCAATATCTGAATTGGAAAGCACAACAACAGGCACAAGATGCTCGGCTAGGAAACTCTA
GCTCCGATGCAAATTATTATCTGTCCAAACCGAGTCTTACTCCTGTATCGGGCAACAAAATCCGCTTAAACAGTGCAAGC
GCTGAGCAATTGCAACAGTTATCTGGGATTGGTGAGAAAAAAGCTGAAGCGATATTGCAGTATCGGCAACAACATGGAAA
ATTCAAAACCATCGAAGAGCTACAGAATATCAAAGGGATAGGGCCTAAATTATTACAGAAAAATAAGGATCGATTAGCCC
TCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

49.242

98.507

0.485
  comEA Acinetobacter baumannii strain A118

45.528

91.791

0.418
  comEA Acinetobacter baumannii D1279779

43.902

91.791

0.403

Multiple sequence alignment