Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACJQW4_RS04395 Genome accession   NZ_CP178606
Coordinates   942181..943326 (+) Length   381 a.a.
NCBI ID   WP_241626590.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 937181..948326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS04375 (ACJQW4_04375) - 937753..939768 (-) 2016 WP_241626584.1 TonB-dependent copper receptor -
  ACJQW4_RS04380 (ACJQW4_04380) - 939838..940269 (-) 432 WP_241626843.1 DUF2946 family protein -
  ACJQW4_RS04385 (ACJQW4_04385) def 940363..940893 (-) 531 WP_241626586.1 peptide deformylase -
  ACJQW4_RS04390 (ACJQW4_04390) tsaP 941013..942167 (+) 1155 WP_241626588.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACJQW4_RS04395 (ACJQW4_04395) dprA 942181..943326 (+) 1146 WP_241626590.1 DNA-processing protein DprA Machinery gene
  ACJQW4_RS04400 (ACJQW4_04400) - 943365..943934 (+) 570 WP_241626592.1 Sua5/YciO/YrdC/YwlC family protein -
  ACJQW4_RS04405 (ACJQW4_04405) - 944318..945247 (-) 930 WP_241626594.1 DMT family transporter -
  ACJQW4_RS04410 (ACJQW4_04410) - 945347..946105 (+) 759 WP_241626596.1 AraC family transcriptional regulator -
  ACJQW4_RS04415 (ACJQW4_04415) - 946211..946756 (+) 546 WP_241626598.1 glutathione peroxidase -
  ACJQW4_RS04420 (ACJQW4_04420) - 946930..947343 (+) 414 WP_241626600.1 RcnB family protein -
  ACJQW4_RS04425 (ACJQW4_04425) - 947497..948072 (+) 576 WP_241626602.1 hypothetical protein -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 42891.08 Da        Isoelectric Point: 6.6174

>NTDB_id=1090397 ACJQW4_RS04395 WP_241626590.1 942181..943326(+) (dprA) [Acinetobacter sp. A7.4]
MLKPLSQVQMDTITLWYLVQHSLSSFYKLEQHFGSIHNAIQPESLLLWPGLGLHKNHLQRAQQFYTPAEQSKFQRIIENI
QQHADFILCYQDPEYPRQLLPYSDKPPILFGQGQLSLLMQPQIAIVGSRKPSPHGRQIAYDFSYYLSEKGFVINSGLAQG
IDEAAHQGALPHQRTLAVMGTGLDQTYPSQHQQLRQQILQQSGTIITEFLPHTPPLQHHFPRRNRIVSALSLGVIVAEAS
LNSGSIITAKLAAEQGKLVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVLEDLALPTQWQAQQQAHDESLTTSPIVKP
EIPEHLMPLYNQLDWTGAALDHLAIHLQQDAATLTAQLMELELLGLCMQQSGVFLRCRPIQ

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1090397 ACJQW4_RS04395 WP_241626590.1 942181..943326(+) (dprA) [Acinetobacter sp. A7.4]
ATGCTGAAACCATTATCACAAGTACAAATGGACACCATTACCTTGTGGTATTTGGTTCAGCACTCGCTCAGCAGTTTTTA
TAAGCTCGAACAGCATTTTGGAAGTATTCACAATGCCATTCAACCTGAAAGCTTGCTGCTTTGGCCAGGTCTCGGTTTAC
ATAAAAATCATCTGCAACGTGCGCAACAATTTTACACGCCCGCTGAACAAAGTAAGTTTCAACGCATCATTGAAAATATT
CAGCAACACGCTGATTTTATCTTGTGTTACCAAGATCCAGAATATCCACGACAACTGCTGCCCTACAGCGATAAACCACC
CATTTTGTTTGGACAAGGTCAATTATCACTCTTGATGCAACCGCAAATTGCCATTGTTGGTAGTCGTAAACCCAGCCCGC
ATGGGCGACAAATTGCCTATGACTTTTCTTACTATTTAAGCGAAAAAGGCTTTGTAATTAACAGTGGTTTGGCACAAGGC
ATAGACGAAGCTGCACATCAAGGTGCTTTGCCTCACCAGCGTACCCTAGCGGTTATGGGCACTGGTTTAGATCAAACTTA
TCCTTCACAACACCAACAGTTGCGACAACAGATTTTACAGCAGTCAGGTACGATCATTACTGAGTTCTTGCCACACACCC
CACCTCTTCAGCATCATTTCCCGCGACGCAATCGAATTGTCAGCGCCCTCTCTTTAGGTGTAATTGTTGCGGAAGCCAGT
CTGAATAGTGGTTCAATCATTACTGCAAAACTGGCAGCAGAACAAGGTAAACTGGTCTTCGCCATTCCTGGACATATTTA
TAGTGAGTTTCATCAGGGCTGCCATCAATTGATTCGTGAAGGAGCGATTTTGGTTGATCATCCTGAACAAGTGTTAGAAG
ACCTCGCCTTACCAACACAATGGCAAGCACAGCAGCAAGCCCATGATGAATCTCTTACAACTTCACCCATCGTAAAGCCT
GAAATCCCTGAACATTTGATGCCACTGTATAATCAACTGGACTGGACAGGTGCAGCTTTAGATCATTTAGCCATCCACTT
GCAGCAAGATGCCGCAACTCTGACCGCGCAGTTGATGGAATTAGAACTTTTAGGCTTATGCATGCAACAATCTGGGGTGT
TTTTGCGTTGTCGTCCTATTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.138

99.213

0.656

  dprA Acinetobacter baumannii D1279779

65.608

99.213

0.651

  dprA Acinetobacter baylyi ADP1

62.632

99.738

0.625


Multiple sequence alignment