Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACJQW4_RS04390 Genome accession   NZ_CP178606
Coordinates   941013..942167 (+) Length   384 a.a.
NCBI ID   WP_241626588.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 936013..947167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS04375 (ACJQW4_04375) - 937753..939768 (-) 2016 WP_241626584.1 TonB-dependent copper receptor -
  ACJQW4_RS04380 (ACJQW4_04380) - 939838..940269 (-) 432 WP_241626843.1 DUF2946 family protein -
  ACJQW4_RS04385 (ACJQW4_04385) def 940363..940893 (-) 531 WP_241626586.1 peptide deformylase -
  ACJQW4_RS04390 (ACJQW4_04390) tsaP 941013..942167 (+) 1155 WP_241626588.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACJQW4_RS04395 (ACJQW4_04395) dprA 942181..943326 (+) 1146 WP_241626590.1 DNA-processing protein DprA Machinery gene
  ACJQW4_RS04400 (ACJQW4_04400) - 943365..943934 (+) 570 WP_241626592.1 Sua5/YciO/YrdC/YwlC family protein -
  ACJQW4_RS04405 (ACJQW4_04405) - 944318..945247 (-) 930 WP_241626594.1 DMT family transporter -
  ACJQW4_RS04410 (ACJQW4_04410) - 945347..946105 (+) 759 WP_241626596.1 AraC family transcriptional regulator -
  ACJQW4_RS04415 (ACJQW4_04415) - 946211..946756 (+) 546 WP_241626598.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41902.25 Da        Isoelectric Point: 8.7563

>NTDB_id=1090396 ACJQW4_RS04390 WP_241626588.1 941013..942167(+) (tsaP) [Acinetobacter sp. A7.4]
MKKVLKGMPSFSALGFKQQLLALTVGLAISVGSIAVVEAAPARNINPPSLKAGAPQVYVVKKGDTLWDISGKFLDKPWRW
PEIWASNRHVKNPHWIFPGDKLLLCSYQGKPLIGKDEGDGCDGIIRRYAGGTKLQPQVRVESLNNAIPVIPLENIKQWLE
HSTIIAPESIANTPYVLGTADQRVLAGKGQTIYARGNGLEVGQQYAVYREGDPYTLLNPKGKKYDAGLELNQVATGVAVA
SENDITTIELTDSFNAEVRRGDRVLPVYDPMLPTLFYPTMAEDVTVGGQIVRVMGSIGTAAKHSVVTIDRGNLEGVQVGH
VFSINQKGEQVRDPKTKEMVQLPGQKIGNLMVFKTFDHFSYAYVLDSSLPVKIGASIQPPLMDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1090396 ACJQW4_RS04390 WP_241626588.1 941013..942167(+) (tsaP) [Acinetobacter sp. A7.4]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAACAGCAATTGTTGGCACTGACTGTCGGTTT
GGCAATCAGTGTTGGTTCTATCGCAGTGGTTGAAGCTGCACCAGCGCGTAACATCAATCCACCCTCGTTAAAAGCGGGGG
CACCACAAGTTTATGTGGTCAAAAAGGGGGACACCCTTTGGGATATTTCTGGAAAATTCTTAGACAAGCCTTGGCGCTGG
CCTGAAATTTGGGCAAGCAACCGTCACGTAAAAAATCCACATTGGATTTTCCCTGGTGACAAGCTGCTTCTGTGTAGCTA
CCAAGGCAAGCCATTGATTGGTAAAGATGAAGGTGACGGCTGTGACGGCATTATTCGTCGTTATGCAGGCGGTACCAAAC
TACAACCACAGGTTCGTGTTGAATCTTTAAATAATGCCATCCCTGTGATTCCACTGGAAAACATTAAACAGTGGTTAGAA
CACTCGACTATTATTGCACCTGAATCAATTGCCAATACTCCGTATGTTCTGGGTACGGCTGATCAACGCGTTCTAGCAGG
TAAAGGACAAACCATTTATGCACGTGGCAATGGTTTAGAGGTCGGTCAACAATATGCGGTCTATCGTGAAGGCGACCCGT
ACACCTTGTTGAACCCCAAAGGGAAAAAATACGATGCAGGTCTTGAGTTAAATCAAGTTGCAACTGGCGTCGCGGTGGCA
AGTGAAAATGACATTACCACGATTGAGTTAACCGACAGCTTTAATGCAGAAGTCCGTCGTGGCGATCGCGTCTTGCCTGT
ATATGACCCAATGCTACCGACCCTGTTCTACCCGACCATGGCAGAAGATGTCACCGTAGGTGGACAAATTGTGCGGGTGA
TGGGTTCAATTGGTACGGCAGCCAAACATAGTGTCGTCACCATTGACCGTGGGAATCTTGAAGGCGTTCAAGTCGGTCAC
GTATTTAGCATCAACCAAAAAGGTGAACAGGTTCGAGACCCGAAAACCAAAGAAATGGTGCAATTGCCGGGGCAAAAAAT
TGGTAACCTGATGGTCTTCAAGACTTTTGATCATTTTAGTTATGCTTATGTATTGGATAGTTCATTACCAGTCAAAATCG
GGGCTTCAATTCAACCGCCATTAATGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.61

100

0.698

Multiple sequence alignment