Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABFT42_RS20865 Genome accession   NZ_CP178596
Coordinates   4040246..4040764 (-) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus mojavensis strain C3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4035246..4045764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS20835 (ABFT42_20835) - 4035756..4037108 (+) 1353 WP_326330133.1 MFS transporter -
  ABFT42_RS20840 (ABFT42_20840) - 4037140..4037694 (-) 555 WP_413286813.1 maltose acetyltransferase domain-containing protein -
  ABFT42_RS20845 (ABFT42_20845) - 4037713..4038093 (-) 381 WP_268445136.1 VOC family protein -
  ABFT42_RS20850 (ABFT42_20850) - 4038145..4039086 (-) 942 WP_413286814.1 LacI family DNA-binding transcriptional regulator -
  ABFT42_RS20855 (ABFT42_20855) xth 4039145..4039903 (-) 759 WP_268448521.1 exodeoxyribonuclease III -
  ABFT42_RS20860 (ABFT42_20860) rpsR 4039964..4040203 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  ABFT42_RS20865 (ABFT42_20865) ssbA 4040246..4040764 (-) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABFT42_RS20870 (ABFT42_20870) rpsF 4040805..4041092 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  ABFT42_RS20875 (ABFT42_20875) ychF 4041203..4042303 (-) 1101 WP_010332659.1 redox-regulated ATPase YchF -
  ABFT42_RS20880 (ABFT42_20880) - 4042430..4044433 (-) 2004 WP_413286816.1 molybdopterin-dependent oxidoreductase -
  ABFT42_RS20885 (ABFT42_20885) - 4044484..4044690 (-) 207 WP_010332661.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=1090351 ABFT42_RS20865 WP_010332657.1 4040246..4040764(-) (ssbA) [Bacillus mojavensis strain C3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1090351 ABFT42_RS20865 WP_010332657.1 4040246..4040764(-) (ssbA) [Bacillus mojavensis strain C3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384

Multiple sequence alignment