Detailed information NTG1090190

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: ACJGE3_RS14085
• Genome accession: NZ_CP178562
• Coordinates: 2874950..2875468 (-)
• Length: 172 a.a.
• NCBI ID: WP_004392979.1
• Uniprot ID: A0A9Q3LJE1
• Organism: Bacillus velezensis strain JT-3
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2874950..2885549	2874950..2875468	within	0

Gene organization within MGE regions

Location: 2874950..2885549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJGE3_RS14085 (ACJGE3_14085)	ssbA	2874950..2875468 (-)	519	WP_004392979.1	single-stranded DNA-binding protein SsbA	Machinery gene
ACJGE3_RS14090 (ACJGE3_14090)	rpsF	2875508..2875795 (-)	288	WP_004392977.1	30S ribosomal protein S6	-
ACJGE3_RS14095 (ACJGE3_14095)	ychF	2875907..2877007 (-)	1101	WP_004392975.1	redox-regulated ATPase YchF	-
ACJGE3_RS14100 (ACJGE3_14100)	-	2877134..2879137 (-)	2004	WP_146275982.1	molybdopterin-dependent oxidoreductase	-
ACJGE3_RS14105 (ACJGE3_14105)	-	2879184..2879390 (-)	207	WP_004392973.1	DUF951 domain-containing protein	-
ACJGE3_RS14110 (ACJGE3_14110)	-	2879476..2880501 (-)	1026	WP_088005468.1	hypothetical protein	-
ACJGE3_RS14115 (ACJGE3_14115)	-	2880590..2881135 (+)	546	WP_369614521.1	GNAT family N-acetyltransferase	-
ACJGE3_RS14120 (ACJGE3_14120)	yyaC	2881310..2881924 (+)	615	WP_004392969.1	spore protease YyaC	-
ACJGE3_RS14125 (ACJGE3_14125)	-	2881953..2882804 (-)	852	WP_070082675.1	ParB/RepB/Spo0J family partition protein	-
ACJGE3_RS14130 (ACJGE3_14130)	soj	2882797..2883558 (-)	762	WP_007409899.1	sporulation initiation inhibitor protein Soj	-
ACJGE3_RS14135 (ACJGE3_14135)	noc	2883857..2884708 (-)	852	WP_007409900.1	nucleoid occlusion protein	-
ACJGE3_RS14140 (ACJGE3_14140)	rsmG	2884830..2885549 (-)	720	WP_102422142.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-

Sequence

Protein

• Length: 172 a.a.
• Molecular weight: 18745.31 Da
• Isoelectric Point: 4.7621

>NTDB_id=1090190 ACJGE3_RS14085 WP_004392979.1 2874950..2875468(-) (ssbA) [Bacillus velezensis strain JT-3]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide

• Length: 519 bp

>NTDB_id=1090190 ACJGE3_RS14085 WP_004392979.1 2874950..2875468(-) (ssbA) [Bacillus velezensis strain JT-3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	98.837	100	0.988
ssb	Latilactobacillus sakei subsp. sakei 23K	58.757	100	0.605
ssbB	Bacillus subtilis subsp. subtilis str. 168	64.151	61.628	0.395
ssb	Glaesserella parasuis strain SC1401	35.519	100	0.378