Detailed information NTG1090071

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACL2DY_RS17475
• Genome accession: NZ_CP178544
• Coordinates: 3789827..3790702 (+)
• Length: 291 a.a.
• NCBI ID: WP_413162875.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida strain JK
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3784827..3795702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL2DY_RS17455 (ACL2DY_17455)	nadC	3785058..3785915 (+)	858	WP_408135759.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACL2DY_RS17460 (ACL2DY_17460)	-	3786251..3786679 (+)	429	WP_353851844.1	pilin	-
ACL2DY_RS17465 (ACL2DY_17465)	pilB	3786683..3788389 (+)	1707	WP_408113975.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ACL2DY_RS17470 (ACL2DY_17470)	pilC	3788522..3789763 (+)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
ACL2DY_RS17475 (ACL2DY_17475)	pilD	3789827..3790702 (+)	876	WP_413162875.1	prepilin peptidase	Machinery gene
ACL2DY_RS17480 (ACL2DY_17480)	coaE	3790722..3791336 (+)	615	WP_413162877.1	dephospho-CoA kinase	-
ACL2DY_RS17485 (ACL2DY_17485)	zapD	3791374..3792096 (+)	723	WP_021140336.1	cell division protein ZapD	-
ACL2DY_RS17490 (ACL2DY_17490)	yacG	3792106..3792300 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
ACL2DY_RS17495 (ACL2DY_17495)	mutT	3792378..3792785 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
ACL2DY_RS17500 (ACL2DY_17500)	-	3792794..3793978 (-)	1185	WP_413162880.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32407.70 Da
• Isoelectric Point: 7.0169

>NTDB_id=1090071 ACL2DY_RS17475 WP_413162875.1 3789827..3790702(+) (pilD) [Aeromonas salmonicida strain JK]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

• Length: 876 bp

>NTDB_id=1090071 ACL2DY_RS17475 WP_413162875.1 3789827..3790702(+) (pilD) [Aeromonas salmonicida strain JK]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCACTGGAAAACATACCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCGGTTGCCGTTGCCATGGTAATAACACCAGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTACTGTGGGGCGGGCTGCTGTTCAACCTGCTTGGCGGATACGTGCCTCTCGGCGATGCGGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.556	98.969	0.55
pilD	Acinetobacter baumannii D1279779	55.019	92.44	0.509
pilD	Acinetobacter nosocomialis M2	55.019	92.44	0.509
pilD	Neisseria gonorrhoeae MS11	49.818	94.502	0.471