Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACL6C3_RS02325 Genome accession   NZ_CP178543
Coordinates   548381..548746 (+) Length   121 a.a.
NCBI ID   WP_413165008.1    Uniprot ID   -
Organism   Capilliphycus salinus ALCB114379 voucher ALCB 114379     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543381..553746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6C3_RS02305 (ACL6C3_02305) - 543574..544401 (-) 828 WP_413164998.1 thiazole synthase -
  ACL6C3_RS02310 (ACL6C3_02310) sipA 544493..544741 (-) 249 WP_413165001.1 regulatory protein SipA -
  ACL6C3_RS02315 (ACL6C3_02315) hmpF 544763..546496 (-) 1734 WP_413165004.1 pilus motility taxis protein HmpF -
  ACL6C3_RS02320 (ACL6C3_02320) - 546915..548144 (+) 1230 WP_413165005.1 response regulator -
  ACL6C3_RS02325 (ACL6C3_02325) pilH 548381..548746 (+) 366 WP_413165008.1 response regulator transcription factor Machinery gene
  ACL6C3_RS02330 (ACL6C3_02330) - 548758..549287 (+) 530 Protein_459 chemotaxis protein CheW -
  ACL6C3_RS02335 (ACL6C3_02335) - 549529..553041 (+) 3513 WP_413165010.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13501.64 Da        Isoelectric Point: 5.7260

>NTDB_id=1090034 ACL6C3_RS02325 WP_413165008.1 548381..548746(+) (pilH) [Capilliphycus salinus ALCB114379 voucher ALCB 114379]
MSTVMVVEDSVTQREMISNLLKDSGLHVTVASDGVEALEQVQKHCPDLVVLDIVMPRMNGYELCRRLKSDPKTQNIAVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1090034 ACL6C3_RS02325 WP_413165008.1 548381..548746(+) (pilH) [Capilliphycus salinus ALCB114379 voucher ALCB 114379]
ATGAGTACAGTTATGGTCGTAGAAGACAGTGTCACACAACGGGAGATGATCTCCAATCTCCTCAAAGACAGTGGCTTACA
CGTAACGGTAGCAAGCGATGGTGTTGAAGCCTTAGAACAGGTGCAGAAACATTGTCCGGATTTGGTGGTGCTTGACATTG
TCATGCCTCGCATGAATGGATATGAACTGTGTCGGCGTTTGAAGTCCGACCCGAAAACCCAAAATATTGCCGTCGTGATG
TGTTCGTCTAAAGGGGAAGAGTTCGATCGCTACTGGGGGATGAAGCAAGGGGCTGATGCTTATATCGCTAAACCCTTTCA
GCCGACTGAACTCGTCGGTACCGTTAAACAATTACTGCGAGGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.667

99.174

0.76
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  pilL-C Synechocystis sp. PCC 6803

38.843

100

0.388
  chpA Acinetobacter baumannii strain A118

39.655

95.868

0.38

Multiple sequence alignment