Detailed information NTG1089913

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACKUFS_RS26890
• Genome accession: NZ_CP178532
• Coordinates: 5964328..5965668 (-)
• Length: 446 a.a.
• NCBI ID: WP_007253450.1
• Uniprot ID: -
• Organism: Pseudomonas cannabina strain YM7930
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5959328..5970668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUFS_RS26880 (ACKUFS_26880)	-	5962334..5963449 (-)	1116	WP_007253452.1	efflux RND transporter periplasmic adaptor subunit	-
ACKUFS_RS26885 (ACKUFS_26885)	-	5963531..5964148 (-)	618	WP_007253451.1	TetR/AcrR family transcriptional regulator	-
ACKUFS_RS26890 (ACKUFS_26890)	pilR	5964328..5965668 (-)	1341	WP_007253450.1	sigma-54-dependent transcriptional regulator	Regulator
ACKUFS_RS26895 (ACKUFS_26895)	pilS	5965671..5967263 (-)	1593	WP_007253449.1	sensor histidine kinase	Regulator
ACKUFS_RS26900 (ACKUFS_26900)	-	5967253..5967492 (-)	240	WP_054998717.1	PP0621 family protein	-
ACKUFS_RS26905 (ACKUFS_26905)	-	5967622..5968644 (-)	1023	WP_007253447.1	outer membrane protein assembly factor BamD	-
ACKUFS_RS26910 (ACKUFS_26910)	rluD	5968794..5969756 (+)	963	WP_005895286.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACKUFS_RS26915 (ACKUFS_26915)	pgeF	5969753..5970481 (+)	729	WP_007253446.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50127.19 Da
• Isoelectric Point: 6.5081

>NTDB_id=1089913 ACKUFS_RS26890 WP_007253450.1 5964328..5965668(-) (pilR) [Pseudomonas cannabina strain YM7930]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSVQPVRSIDSRLLGDSPPMRTLRTQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSIGGQQEQVVDVRILCATHKDLSAEVVAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLQRLAGKDAQPVARLHAQALETLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLAECSSPQEHHGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1089913 ACKUFS_RS26890 WP_007253450.1 5964328..5965668(-) (pilR) [Pseudomonas cannabina strain YM7930]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGACGATGAGCCGGATATTCGTGAACTCCTGGAAATCACCCTGGGGCGCAT
GAAGCTCGACACTCGCAGCGCCCGCAATGTCGCCGAGGCGCATGAATGGCTGGCGCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAACGGCCTTGAACTGGTGCAGCATATCCAGCACGGTTATCCGCAAGTGCCGGTGGCA
ATGATCACCGCGCATGGCAACCTGGACACCGCGATTCATGCGCTAAAAGCCGGGGCGTTCGATTTCGTGACCAAGCCGGT
TGACCTCAACCGCCTGCGCGAGCTGGTCAACAGCGCGCTGAGCCTGCCCTCCAGCGTGCAACCGGTGCGCAGCATCGACA
GCCGCCTGCTCGGCGATTCGCCGCCGATGCGCACGTTGCGTACCCAGATCGGCAAGCTGGCGCGCAGTCAGGCGCCGATC
TACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTGGCGCGCTTGATCCACGAGCAGGGGCCGCGGAGTGAAAAGCC
GTTCGTGCCAGTCAATTGCGGGGCGATTCCTTCCGAATTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCAGCTTCA
GCGGCGCCCATGAAGACAAGCCGGGCCTGTTTCAGGCGGCGCATAACGGCACGTTGTTTCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAATCTATTCGCAGCATCGGCGGTCAGCAGGAACAGGT
GGTCGACGTGCGCATTCTCTGCGCCACCCATAAGGACCTCAGCGCCGAAGTGGTCGCCGGGCGTTTCCGTCAGGATTTGT
ATTACCGGTTGAACGTGATCGAACTGCGCGTCCCCTCATTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCCGCCAGC
GTTCTGCAGCGTCTGGCGGGCAAGGATGCGCAACCGGTTGCGCGTTTGCATGCACAGGCACTGGAAACCCTGAAAAACTA
TCGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGCGAAAACGACGAAATCCACG
CCAGCGACCTGCGTCTGGCCGAATGCTCCAGCCCGCAGGAACACCACGGCGCAAACCTGGCCGATATCGACAATCTGGAA
GATTACCTGGAAAGCATCGAGCGCAAACTGATCCTGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACCGCCGCCGCAGA
ACGGCTCAGCTTGTCGTTCCGCTCGTTGCGTTACCGGTTGAAAAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	99.327	0.783
pilR	Acinetobacter baumannii strain A118	48.922	100	0.509
luxO	Vibrio cholerae strain A1552	37.303	99.776	0.372