Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACKUFS_RS26895 Genome accession   NZ_CP178532
Coordinates   5965671..5967263 (-) Length   530 a.a.
NCBI ID   WP_007253449.1    Uniprot ID   -
Organism   Pseudomonas cannabina strain YM7930     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5960671..5972263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFS_RS26880 (ACKUFS_26880) - 5962334..5963449 (-) 1116 WP_007253452.1 efflux RND transporter periplasmic adaptor subunit -
  ACKUFS_RS26885 (ACKUFS_26885) - 5963531..5964148 (-) 618 WP_007253451.1 TetR/AcrR family transcriptional regulator -
  ACKUFS_RS26890 (ACKUFS_26890) pilR 5964328..5965668 (-) 1341 WP_007253450.1 sigma-54-dependent transcriptional regulator Regulator
  ACKUFS_RS26895 (ACKUFS_26895) pilS 5965671..5967263 (-) 1593 WP_007253449.1 sensor histidine kinase Regulator
  ACKUFS_RS26900 (ACKUFS_26900) - 5967253..5967492 (-) 240 WP_054998717.1 PP0621 family protein -
  ACKUFS_RS26905 (ACKUFS_26905) - 5967622..5968644 (-) 1023 WP_007253447.1 outer membrane protein assembly factor BamD -
  ACKUFS_RS26910 (ACKUFS_26910) rluD 5968794..5969756 (+) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACKUFS_RS26915 (ACKUFS_26915) pgeF 5969753..5970481 (+) 729 WP_007253446.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58311.31 Da        Isoelectric Point: 6.9382

>NTDB_id=1089914 ACKUFS_RS26895 WP_007253449.1 5965671..5967263(-) (pilS) [Pseudomonas cannabina strain YM7930]
MTAETPHLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPTRQSHLF
SLAMVDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQTSEVLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALALLGHERLVGQVID
AYSPQLVDRLRQWLINPIMQPRSISTSAIGPELQPSFVALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESETLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPDLLDLKVWLDAFVADFRDTALPN
QLLHVEIHAGTLTTRMDAEQLTQVVTNLVQNGLRYSNQNHSLAQVWLKLHHDRKSDLPILEVLDDGPGVSEQHLSKIFEP
LFTTESKGTGLGLYLSRELCESNQAHLEYAPRPGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1089914 ACKUFS_RS26895 WP_007253449.1 5965671..5967263(-) (pilS) [Pseudomonas cannabina strain YM7930]
GTGACCGCTGAGACGCCCCACCTTGCCAGCCCACAGGCGCAACGAATTCTGCGGCTGTATCACCTTTATCGCCTGACCAT
CGGCGTCGTCCTGGTCCTGTTGATCTCCAGTAGCCTGGAAACCGAACTGTTGCAGCTGGCCAACCCGAACCTGTTCCGCT
CGGGTTGCTGGCTGTACCTGGTGTTCAACATTCTGGTCGTGGTGTTGCTCGAGCGCCCTACCCGTCAGTCACACCTGTTC
AGCCTGGCGATGGTCGACGCGATCATGCTGTCCGGCCTGTTCTATGCGGCAGGCGGCCCGTCCAGCGGCATCGGCAACCT
GCTGATCGCCTCGGTCGCCATCAGTAACGTACTGCTACGCGGCCGTATCGGCTTGTTGATCGCCGCCGTATCTGCCATCG
GCATCATTTACCTGACGTTCTACATCAGCTTCGGCACGCCTTCAGTCTCCAACGACTACGTGCAGGCAGGTTCGCTGGGG
GCGCTGTGCTTCGCCGCTGCGTTGCTGGTGCAGGCGTTGACCGCGCGCATGCAGACCAGCGAAGTGCTTGCCGAACAGCG
TGCAGCGGACGTCGACAGCCTGGAAGAACTCAACGCGCTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGACG
CTCGACGTCAGGTGCTGCTGGCCAATCAGGGCGCGCTGGCTTTGCTGGGCCACGAACGGCTGGTCGGTCAAGTGATAGAC
GCTTACTCGCCGCAGTTGGTTGATCGCCTGCGCCAATGGCTGATCAATCCGATCATGCAGCCGCGCAGCATCAGCACGTC
GGCCATCGGCCCAGAGTTGCAACCGAGTTTCGTCGCACTCAATCGGGGCGATCAGCGCCAAACGCTGATTTTTCTCGAAG
ATCTGTCGCAAATCGCCCATCAGGCGCAACAGCTCAAGCTCGCCGCGCTGGGCCGTCTGACCGCAGGCATCGCCCACGAA
ATACGCAACCCGCTGGGTGCCGTGAGCCACGCTGCGCAGTTGCTCAACGAATCGGAAACACTCAGCGCGCCGGATCGGCG
TCTGGGGCAGATCATTCACGATCAGTCGCAGCGCATTGACCGAGTGATTGAAAACGTCTTGCAGCTCTCTCGGCGACGTG
AGGCGCAACCCGATCTGCTGGACCTGAAAGTCTGGCTGGACGCATTTGTCGCCGACTTTCGCGATACCGCCCTGCCCAAC
CAGTTGCTGCACGTGGAGATCCATGCCGGCACACTCACCACGCGCATGGACGCCGAACAGTTGACACAAGTGGTGACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGCAACCAGAATCACTCCTTGGCGCAGGTCTGGCTGAAACTCCATCATGACCGGA
AAAGCGACCTGCCCATTCTCGAAGTGCTGGACGACGGGCCAGGCGTCAGCGAACAGCACCTGAGCAAGATTTTCGAACCC
TTGTTCACGACTGAAAGCAAAGGCACCGGCCTGGGGCTATACCTTTCCCGTGAGTTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCACCCCGGCCAGGCGGCGGCAGTTGTTTGCGCATTACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.959

100

0.621

Multiple sequence alignment