Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACLZ2J_RS21860 Genome accession   NZ_CP178514
Coordinates   4161746..4162264 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain BS18-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4156746..4167264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS21830 yyaJ 4157249..4158604 (+) 1356 WP_003243011.1 MFS transporter -
  ACLZ2J_RS21835 maa 4158638..4159192 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  ACLZ2J_RS21840 yyaH 4159210..4159590 (-) 381 WP_003244460.1 VOC family protein -
  ACLZ2J_RS21845 ccpB 4159646..4160581 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  ACLZ2J_RS21850 xth 4160640..4161398 (-) 759 WP_413155060.1 exodeoxyribonuclease III -
  ACLZ2J_RS21855 rpsR 4161463..4161702 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACLZ2J_RS21860 ssbA 4161746..4162264 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACLZ2J_RS21865 rpsF 4162305..4162592 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ACLZ2J_RS21870 ychF 4162703..4163803 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACLZ2J_RS21875 yyaE 4163930..4165933 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  ACLZ2J_RS21880 yyzM 4165984..4166190 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1089846 ACLZ2J_RS21860 WP_003219228.1 4161746..4162264(-) (ssbA) [Bacillus subtilis strain BS18-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1089846 ACLZ2J_RS21860 WP_003219228.1 4161746..4162264(-) (ssbA) [Bacillus subtilis strain BS18-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment