Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   ACAM23_RS08735 Genome accession   NZ_AP031394
Coordinates   1686809..1687468 (+) Length   219 a.a.
NCBI ID   WP_000565027.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P28     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1681809..1692468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM23_RS08710 (SPNE16P28_17200) - 1682114..1682431 (-) 318 WP_001151646.1 PTS sugar transporter subunit IIB -
  ACAM23_RS08715 (SPNE16P28_17210) - 1682446..1683342 (-) 897 WP_000825667.1 PEP phosphonomutase -
  ACAM23_RS08720 (SPNE16P28_17220) - 1683345..1684607 (-) 1263 WP_000413336.1 PTS sugar transporter subunit IIC -
  ACAM23_RS08725 (SPNE16P28_17230) - 1684887..1686065 (+) 1179 WP_000175880.1 ROK family transcriptional regulator -
  ACAM23_RS08730 (SPNE16P28_17240) - 1686293..1686739 (-) 447 WP_000155408.1 GNAT family N-acetyltransferase -
  ACAM23_RS08735 (SPNE16P28_17250) cclA/cilC 1686809..1687468 (+) 660 WP_000565027.1 A24 family peptidase Machinery gene
  ACAM23_RS08740 (SPNE16P28_17260) trpA 1687440..1688216 (-) 777 WP_219599503.1 tryptophan synthase subunit alpha -
  ACAM23_RS08745 (SPNE16P28_17270) trpB 1688209..1689432 (-) 1224 WP_000331298.1 tryptophan synthase subunit beta -
  ACAM23_RS08750 (SPNE16P28_17280) - 1689410..1690009 (-) 600 WP_000169872.1 phosphoribosylanthranilate isomerase -
  ACAM23_RS08755 (SPNE16P28_17290) trpC 1689996..1690763 (-) 768 WP_000076545.1 indole-3-glycerol phosphate synthase TrpC -
  ACAM23_RS08760 (SPNE16P28_17300) trpD 1690760..1691764 (-) 1005 WP_000658684.1 anthranilate phosphoribosyltransferase -
  ACAM23_RS08765 (SPNE16P28_17310) - 1691775..1692341 (-) 567 WP_000601921.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24855.00 Da        Isoelectric Point: 7.2564

>NTDB_id=108977 ACAM23_RS08735 WP_000565027.1 1686809..1687468(+) (cclA/cilC) [Streptococcus pneumoniae strain 16P28]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSVSHCDSCQTRLRPLDLIPILSQVFNRFCCRYCKVRYPVWYALFELGLG
LLFLLYSWELLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTFHLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=108977 ACAM23_RS08735 WP_000565027.1 1686809..1687468(+) (cclA/cilC) [Streptococcus pneumoniae strain 16P28]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGTCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTTGCTGTCGCTACTGCAAGGTCCGCTATCCTGTCTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAGTTGCTTTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTT
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

97.26

100

0.973

  cclA/cilC Streptococcus pneumoniae D39

97.26

100

0.973

  cclA/cilC Streptococcus pneumoniae R6

97.26

100

0.973

  cclA/cilC Streptococcus pneumoniae TIGR4

96.804

100

0.968

  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918

  cclA/cilC Streptococcus mitis NCTC 12261

85.845

100

0.858


Multiple sequence alignment