Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   ACLWNE_RS04425 Genome accession   NZ_CP178485
Coordinates   838209..839897 (-) Length   562 a.a.
NCBI ID   WP_413217566.1    Uniprot ID   -
Organism   Thermus oshimai strain Blanco     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 833209..844897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLWNE_RS04395 (ACLWNE_04395) - 833852..834499 (+) 648 WP_339956409.1 chromosome segregation protein ScpA -
  ACLWNE_RS04400 (ACLWNE_04400) - 834638..836266 (+) 1629 WP_413216941.1 IS1634-like element ISTth3 family transposase -
  ACLWNE_RS04405 (ACLWNE_04405) - 836196..836558 (-) 363 WP_413217562.1 nucleotidyltransferase family protein -
  ACLWNE_RS04410 (ACLWNE_04410) - 836622..837197 (+) 576 WP_413217563.1 Uma2 family endonuclease -
  ACLWNE_RS04415 (ACLWNE_04415) - 837194..837541 (-) 348 WP_413217564.1 type II secretion system protein -
  ACLWNE_RS04420 (ACLWNE_04420) - 837618..837974 (-) 357 WP_413217565.1 type II secretion system protein -
  ACLWNE_RS04425 (ACLWNE_04425) comZ 838209..839897 (-) 1689 WP_413217566.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACLWNE_RS04430 (ACLWNE_04430) pilA/pilA3 839906..840598 (-) 693 WP_339956364.1 PilW family protein Machinery gene
  ACLWNE_RS04435 (ACLWNE_04435) pilA/pilA2 840595..841155 (-) 561 WP_016329467.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACLWNE_RS04440 (ACLWNE_04440) - 841152..841619 (-) 468 WP_016329466.1 GspH/FimT family protein -
  ACLWNE_RS04445 (ACLWNE_04445) pilA/pilA1 841674..842144 (-) 471 WP_339956365.1 GspH/FimT family protein Machinery gene
  ACLWNE_RS04450 (ACLWNE_04450) - 842141..842515 (-) 375 WP_339956366.1 DUF1640 domain-containing protein -
  ACLWNE_RS04455 (ACLWNE_04455) - 842512..843270 (-) 759 WP_339956367.1 TerC family protein -
  ACLWNE_RS04460 (ACLWNE_04460) - 843295..844281 (+) 987 WP_339956368.1 YpdA family putative bacillithiol disulfide reductase -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 60143.15 Da        Isoelectric Point: 8.4343

>NTDB_id=1089699 ACLWNE_RS04425 WP_413217566.1 838209..839897(-) (comZ) [Thermus oshimai strain Blanco]
MKRPKGIALVVTLSLLLLIALLVFGTFFTTQLELWITRNDTTSVQAFYAAEAGLQKYKAALFQQYVWQERTGGSPTTGGS
TVCYSSLSAGIDWNRNGTIDPNEAFTNGVMTLAQDETVVDAGGRPVGRYTVTLVRTGAPRVYTLISRGESSGARARVQAT
LLLETPSPLNLAIFAGSGQANKWLNGGATIRGGIYIVGDPANPDREVISSNGNFSLLNWYRLSDYGDLQNYVTEANREAQ
DLCASLRVQYGKISVGGSTQIGEPTNRVKGVFVGRGMQDITGTTVDVCTRTRGVCTEAIGGFDLSDPPSFPTLEGPGGCG
EGKSWRQCIREDAENSLRIVQGTPLPTLSWPTLAVPPAPPPSCLAAFSSATVELDGNAVDCSYTLPSGAKGGFRYTPGSP
ATLEVYGTVALEGFDLTLKRDTRYIAQTGTRKNASLAVLSKNGNRGNLTVEGTLLPNQPQGLFPEHVLGLVVEKDLYQKG
RYMAAPVYAGGTFRIVKQNVLMGSVMSNEFCTTSAGNQTSCAAGQSAEVIFVNTGANKPRILRLVDRVAGRYAFLILSYE
RR

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=1089699 ACLWNE_RS04425 WP_413217566.1 838209..839897(-) (comZ) [Thermus oshimai strain Blanco]
ATGAAAAGACCCAAAGGAATCGCCCTGGTGGTCACCCTAAGCCTCCTTCTCCTCATCGCCCTTCTGGTCTTCGGCACCTT
CTTCACCACCCAGCTGGAGCTCTGGATCACCCGGAACGACACCACCTCCGTCCAGGCCTTCTACGCCGCGGAGGCCGGGC
TTCAGAAGTACAAGGCGGCCCTCTTCCAGCAGTACGTCTGGCAGGAGCGCACCGGGGGAAGCCCCACCACGGGGGGGAGC
ACGGTCTGCTACTCCAGCCTGAGCGCGGGGATTGACTGGAACCGCAACGGCACCATAGACCCGAACGAGGCCTTCACCAA
CGGCGTCATGACCCTGGCCCAGGACGAGACCGTGGTGGACGCGGGAGGGCGCCCTGTGGGCCGGTACACCGTGACCCTGG
TGCGCACCGGCGCCCCCCGGGTCTACACCCTCATCTCCCGGGGGGAGTCCTCGGGGGCCAGGGCCCGGGTCCAGGCCACC
CTCCTCCTGGAAACCCCAAGCCCCCTCAACCTGGCCATCTTCGCGGGAAGCGGCCAGGCCAACAAATGGCTGAACGGCGG
GGCCACCATCCGGGGGGGGATCTACATCGTGGGGGACCCCGCCAACCCGGACCGGGAGGTCATCTCCTCCAACGGGAACT
TCAGCCTGCTGAACTGGTACAGGCTGAGCGACTACGGCGACCTGCAGAACTACGTCACCGAGGCCAACCGCGAGGCCCAG
GACCTCTGCGCCTCCTTACGGGTGCAGTACGGGAAGATCTCCGTGGGGGGGAGCACCCAGATCGGGGAGCCCACCAACCG
GGTGAAGGGGGTCTTCGTGGGCCGGGGCATGCAGGACATCACGGGGACCACGGTGGACGTCTGCACCCGCACCCGGGGGG
TCTGCACCGAGGCCATCGGGGGCTTTGACCTTTCCGACCCCCCAAGCTTCCCCACCCTGGAGGGCCCCGGAGGGTGCGGG
GAGGGCAAGAGCTGGCGGCAGTGCATCCGGGAGGACGCGGAAAATAGCCTCCGCATCGTCCAGGGAACCCCCTTGCCCAC
CCTGAGCTGGCCCACTTTGGCCGTCCCCCCCGCCCCGCCCCCCTCCTGCCTGGCCGCCTTTAGCTCAGCCACGGTAGAGC
TGGACGGGAACGCGGTGGACTGCTCCTACACCCTCCCCAGCGGGGCCAAGGGGGGCTTCCGGTACACCCCGGGAAGCCCG
GCCACCCTGGAGGTCTACGGCACCGTGGCCCTGGAGGGGTTTGACCTCACCCTCAAGCGGGACACCCGCTACATCGCCCA
GACAGGCACCCGCAAGAACGCCAGCCTGGCGGTGCTCAGCAAGAACGGGAACCGGGGCAACCTCACCGTGGAAGGCACCC
TCCTCCCGAACCAGCCCCAGGGCCTCTTCCCCGAGCACGTGCTGGGCCTGGTGGTGGAGAAGGACCTGTACCAGAAGGGC
CGGTACATGGCCGCCCCCGTCTACGCCGGGGGCACCTTCCGCATCGTGAAGCAGAACGTGCTCATGGGCTCCGTCATGAG
CAACGAGTTCTGCACCACCAGCGCCGGGAACCAGACCTCCTGCGCCGCGGGCCAGTCCGCGGAGGTGATCTTCGTGAACA
CCGGGGCCAACAAGCCCCGCATCCTGCGGCTGGTGGACCGGGTGGCGGGCCGGTACGCCTTCCTCATCCTCTCCTACGAG
CGGCGCTGA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(5-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

58.053

100

0.584

Multiple sequence alignment