Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLTDJ_RS02860 Genome accession   NZ_CP178394
Coordinates   586106..586630 (+) Length   174 a.a.
NCBI ID   WP_016779190.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 581106..591630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLTDJ_RS02850 (ACLTDJ_02850) uvrA 581672..584506 (-) 2835 WP_094999498.1 excinuclease ABC subunit UvrA -
  ACLTDJ_RS02855 (ACLTDJ_02855) - 584705..586096 (+) 1392 WP_095019084.1 MFS transporter -
  ACLTDJ_RS02860 (ACLTDJ_02860) ssb 586106..586630 (+) 525 WP_016779190.1 single-stranded DNA-binding protein Machinery gene
  ACLTDJ_RS02865 (ACLTDJ_02865) - 586763..589201 (-) 2439 WP_340068766.1 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family -
  ACLTDJ_RS02870 (ACLTDJ_02870) - 589896..591188 (+) 1293 WP_413052360.1 carbohydrate porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19502.60 Da        Isoelectric Point: 5.9314

>NTDB_id=1089446 ACLTDJ_RS02860 WP_016779190.1 586106..586630(+) (ssb) [Pseudomonas bubulae strain S31]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQNQGGGNNYQQQQSAPRQQAQRPAPQQQQQSRPAPQQQAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1089446 ACLTDJ_RS02860 WP_016779190.1 586106..586630(+) (ssb) [Pseudomonas bubulae strain S31]
ATGGCCCGTGGGGTTAACAAAGTTATATTGGTCGGCACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAAACCGGTCAGAAAGTCGAGAAGACTGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTGGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAAACCAGGGTGGTGGCAACAACTACCAGCAACAACAGTCGG
CTCCGCGTCAGCAGGCTCAACGCCCTGCACCGCAGCAACAGCAGCAGTCGCGCCCTGCGCCGCAACAGCAGGCCCCGCAG
CCAGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.322

100

0.603
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.517
  ssb Neisseria meningitidis MC58

48.333

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.5

Multiple sequence alignment