Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLRDL_RS03295 Genome accession   NZ_CP178387
Coordinates   680795..681328 (+) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae isolate CTMA_1842     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 675795..686328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS03280 (ACLRDL_03280) uvrA 675837..678659 (-) 2823 WP_000357701.1 excinuclease ABC subunit UvrA -
  ACLRDL_RS03285 (ACLRDL_03285) galU 678815..679687 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACLRDL_RS03290 (ACLRDL_03290) qstR 679859..680503 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACLRDL_RS03295 (ACLRDL_03295) ssb 680795..681328 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  ACLRDL_RS03300 (ACLRDL_03300) csrD 681506..683464 (+) 1959 WP_000216145.1 RNase E specificity factor CsrD -
  ACLRDL_RS03305 (ACLRDL_03305) - 683477..684916 (+) 1440 WP_000743254.1 PilN domain-containing protein -
  ACLRDL_RS03310 (ACLRDL_03310) gspM 684913..685563 (+) 651 WP_000835150.1 type II secretion system protein GspM -
  ACLRDL_RS03315 (ACLRDL_03315) - 685556..685873 (+) 318 WP_000252812.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=1089379 ACLRDL_RS03295 WP_000168287.1 680795..681328(+) (ssb) [Vibrio cholerae isolate CTMA_1842]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1089379 ACLRDL_RS03295 WP_000168287.1 680795..681328(+) (ssb) [Vibrio cholerae isolate CTMA_1842]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486

Multiple sequence alignment