Detailed information NTG1089252

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACL0K2_RS20100
• Genome accession: NZ_CP178378
• Coordinates: 4352672..4354897 (+)
• Length: 741 a.a.
• NCBI ID: WP_413043291.1
• Uniprot ID: -
• Organism: Pseudomonas sp. YJ42
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4347672..4359897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL0K2_RS20070 (ACL0K2_20070)	-	4347782..4348087 (-)	306	WP_239609086.1	phosphodiesterase	-
ACL0K2_RS20075 (ACL0K2_20075)	-	4348090..4348662 (-)	573	WP_045162940.1	PilZ domain-containing protein	-
ACL0K2_RS20080 (ACL0K2_20080)	-	4348763..4350010 (+)	1248	WP_045162890.1	lipoprotein-releasing ABC transporter permease subunit	-
ACL0K2_RS20085 (ACL0K2_20085)	lolD	4350018..4350716 (+)	699	WP_413044497.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
ACL0K2_RS20090 (ACL0K2_20090)	-	4350716..4351963 (+)	1248	WP_413043290.1	lipoprotein-releasing ABC transporter permease subunit	-
ACL0K2_RS20095 (ACL0K2_20095)	-	4351973..4352488 (-)	516	WP_045162888.1	DUF2062 domain-containing protein	-
ACL0K2_RS20100 (ACL0K2_20100)	comA	4352672..4354897 (+)	2226	WP_413043291.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACL0K2_RS20105 (ACL0K2_20105)	exbB	4354969..4355601 (+)	633	WP_045162887.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACL0K2_RS20110 (ACL0K2_20110)	-	4355598..4356026 (+)	429	WP_045162886.1	ExbD/TolR family protein	-
ACL0K2_RS20115 (ACL0K2_20115)	lpxK	4356026..4357030 (+)	1005	WP_045162885.1	tetraacyldisaccharide 4'-kinase	-
ACL0K2_RS20120 (ACL0K2_20120)	-	4357077..4357262 (+)	186	WP_025241005.1	Trm112 family protein	-
ACL0K2_RS20125 (ACL0K2_20125)	kdsB	4357259..4358023 (+)	765	WP_045162884.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACL0K2_RS20130 (ACL0K2_20130)	-	4358026..4358490 (+)	465	WP_239609077.1	low molecular weight protein-tyrosine-phosphatase	-
ACL0K2_RS20135 (ACL0K2_20135)	murB	4358487..4359506 (+)	1020	WP_413043292.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 81213.53 Da
• Isoelectric Point: 10.0463

>NTDB_id=1089252 ACL0K2_RS20100 WP_413043291.1 4352672..4354897(+) (comA) [Pseudomonas sp. YJ42]
MRTALLALAAGLLLLRFLPQLPPFGSLPFMFVTGLVLLPFRWRALGCFLCGLAWACLSAHWALSDRLPTELDGRTFWLEG
QVTGLPDVRDGVVRFELVDVSSRHAGLPSRMRLAWYGGPMIQAGERWRLAAKLKRPRGLVNPHPFDYEAWLLARRIGASG
TIKAGERVAFSEGNLAWRDRLRQRLMAVDAQGRSGAIAALVVGDDSGLSKSDWRILQDTGTVHLMVISGQHVGMLAGLLY
SLVALLARWGIWPRRIDWLPCACGLALFGALAYGWLAGFEVPVQRASVMVALVLLWRLRFRHLGVWLPLLVALDGVLLID
PLVSLQSGFWLSFLAVALLALVFRGRLGSWDWWRALSRAQWCMALGLLPALLALGLPVSLSSPIANLFAVPLVSMLIVPL
SLMGVSLLWLAGVGESLLWLAGGLLAFLFDTLQWLAGWQAAWLPASLPIWAWVLVALGTLLFLLPAGVPFRALGLLLLAP
LLFPPVNKPAAGQAEIWVLDVGQGLAVLVRTREHALLYDAGPRYGDFDIGERVVFPSLRTLGLTDLDLMLLSHADSDHAG
GAMAIKRLMPLARVLSGEPERLPASLGAEACRSGEHWEWEQVRFTLWRWSQAQDGNQSSCVLLVEAGGERLLLTGDIDTL
AEQALLASKLPLGVRWLLVPHHGSRSSSSTAFIQAAGAEGALVSRSLHNAFGHPHPDVVQRLRASGARIFDTAELGALQI
RLGRFEPIRGLRAERRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=1089252 ACL0K2_RS20100 WP_413043291.1 4352672..4354897(+) (comA) [Pseudomonas sp. YJ42]
ATGCGTACAGCCTTGCTGGCACTGGCGGCAGGCCTTTTATTGCTGCGCTTTCTACCGCAACTGCCACCTTTTGGGTCGCT
GCCGTTCATGTTCGTGACGGGACTGGTCTTGTTGCCGTTTCGTTGGCGAGCGCTTGGCTGTTTTCTTTGCGGTCTCGCAT
GGGCCTGCCTGAGTGCTCATTGGGCGTTAAGCGACCGCCTCCCGACCGAACTCGACGGTCGTACCTTCTGGCTTGAAGGG
CAGGTGACTGGACTGCCGGATGTTCGTGACGGTGTGGTGCGCTTCGAACTGGTTGATGTCTCATCCCGACATGCCGGCTT
ACCCTCGCGGATGCGCCTGGCCTGGTACGGTGGACCGATGATCCAGGCGGGAGAGCGATGGAGGCTCGCCGCCAAGCTCA
AAAGGCCACGTGGCCTGGTCAATCCCCATCCATTCGATTACGAGGCCTGGCTTCTTGCACGTCGGATCGGTGCCAGCGGC
ACGATCAAAGCAGGCGAGCGGGTGGCGTTTTCAGAGGGGAACCTGGCGTGGCGCGATCGGTTGCGCCAACGCTTGATGGC
GGTTGACGCCCAAGGACGCTCGGGTGCAATTGCAGCGCTGGTGGTTGGCGATGACAGTGGTTTGTCCAAGTCAGACTGGC
GCATCCTGCAGGACACCGGAACCGTGCATTTGATGGTGATCTCGGGACAGCATGTGGGGATGCTGGCCGGTCTGCTCTAT
AGCCTGGTTGCGCTATTGGCGCGTTGGGGCATCTGGCCGCGGCGGATCGACTGGCTGCCTTGTGCCTGCGGTCTGGCGCT
GTTCGGAGCACTCGCATACGGTTGGTTGGCGGGCTTCGAAGTCCCGGTTCAGCGGGCTTCGGTGATGGTCGCGCTGGTGC
TGTTGTGGCGCTTGCGGTTTCGACATCTCGGTGTCTGGTTACCGCTGCTCGTCGCGCTCGATGGCGTCTTGCTAATCGAT
CCATTGGTTAGTTTGCAATCGGGATTCTGGTTGTCTTTCCTGGCCGTGGCGCTGCTCGCATTGGTCTTCCGTGGCCGACT
GGGCAGCTGGGACTGGTGGCGGGCGTTGAGCCGTGCCCAGTGGTGCATGGCGCTCGGCCTGTTGCCGGCATTGCTTGCGC
TGGGCTTGCCGGTGAGCCTGAGCAGTCCAATCGCCAATCTTTTTGCGGTGCCACTGGTCAGCATGCTGATCGTGCCGCTG
TCTCTGATGGGGGTTTCGCTGCTGTGGTTGGCGGGCGTTGGTGAGTCGTTGCTATGGTTGGCGGGTGGCCTGTTGGCGTT
CCTTTTCGATACGCTGCAATGGCTTGCCGGTTGGCAGGCTGCATGGCTACCGGCATCGTTGCCGATATGGGCCTGGGTGC
TGGTCGCGCTGGGGACGCTGCTATTTTTGTTGCCGGCCGGGGTGCCATTTCGAGCGTTGGGACTGTTGCTTCTCGCGCCG
TTGCTATTTCCGCCAGTAAACAAACCCGCAGCGGGACAGGCGGAAATTTGGGTGCTTGATGTCGGTCAGGGGCTGGCCGT
GCTGGTGCGCACCCGGGAACATGCACTTCTATATGACGCGGGACCGCGCTATGGCGACTTCGATATTGGCGAGCGGGTGG
TGTTTCCGTCGTTGAGAACGCTGGGATTGACCGATCTCGACCTGATGCTCCTCAGTCACGCTGACAGCGATCATGCCGGT
GGCGCCATGGCTATCAAGAGGCTGATGCCGTTGGCGCGAGTGCTCAGCGGTGAGCCGGAAAGACTGCCTGCTTCGCTGGG
TGCCGAGGCGTGCCGCTCTGGAGAGCACTGGGAATGGGAGCAGGTCCGCTTTACGCTTTGGCGATGGTCACAAGCCCAGG
ATGGAAACCAGTCGTCGTGCGTGCTGCTGGTCGAAGCCGGCGGTGAACGCCTGCTATTGACCGGAGATATCGATACGCTG
GCCGAACAGGCGCTGCTGGCGAGCAAACTGCCGCTGGGCGTGCGGTGGTTGCTGGTGCCGCATCACGGTAGTCGCAGCTC
ATCTTCAACCGCATTTATCCAGGCAGCCGGTGCCGAAGGCGCGCTTGTCTCGCGCAGCCTGCACAACGCCTTCGGCCATC
CGCATCCGGATGTCGTGCAACGTTTGCGGGCATCGGGCGCCCGGATTTTCGATACGGCTGAACTGGGTGCTCTGCAGATC
CGTCTCGGCCGTTTCGAGCCCATTCGAGGATTGCGCGCCGAACGGCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (5-167)

• Competence protein (Competence) (200-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	72.361	97.166	0.703
comA	Ralstonia pseudosolanacearum GMI1000	35.377	100	0.374